Difference between revisions of "TSS:Hg 1055.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|MRT4= | |MRT4= | ||
| − | |all_trans= | + | |all_trans=LF206694:-52 MA442271:-52 ENST00000330263.5:185 NM_016183:185 AK027569:185 AF173378:186 BC003013:187 BC006504:187 AK024227:200 AY303790:205 AK126387:213 ENST00000493700.1:215 KJ898840:216 AK295328:216 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|dJ657E11.4= | |dJ657E11.4= | ||
| − | |distance=- | + | |distance=-52 |
| − | |distance_to_tss= | + | |distance_to_tss=-88 |
|end=19251620 | |end=19251620 | ||
|end_of_center_position=19251612 | |end_of_center_position=19251612 | ||
| − | |entrez_id= | + | |entrez_id=23065 |
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias= | + | |gene_alias=CAVIPMR{{!}}KIAA0090 |
| − | |gene_description= | + | |gene_description=ER membrane protein complex subunit 1 |
|gene_id=51154 | |gene_id=51154 | ||
| − | |gene_name= | + | |gene_name=EMC1 |
|gene_source=HGNC:18477 | |gene_source=HGNC:18477 | ||
|gene_symbol=MRTO4 | |gene_symbol=MRTO4 | ||
| Line 20: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:18477 | |hgnc_mgi_id=HGNC:18477 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000127463 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015047 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_015047 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.439200 |
|num_trans=14 | |num_trans=14 | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=19251611 | |start_of_center_position=19251611 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF206694 MA442271 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1055.1 | |tss_id=hg_1055.1 | ||
Latest revision as of 18:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19251611 |
|---|---|
| End of the center position in the TSS region: | 19251612 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF206694 MA442271 |
|---|---|
| Distance: | -52 |
| Num_trans: | 14 |
| All_trans: | LF206694:-52 MA442271:-52 ENST00000330263.5:185 NM_016183:185 AK027569:185 AF173378:186 BC003013:187 BC006504:187 AK024227:200 AY303790:205 AK126387:213 ENST00000493700.1:215 KJ898840:216 AK295328:216 |
TATA-Box annotation
| Distance to TSS: | -88 |
|---|---|
| Nearest PromoterID: | NM_015047 |
| Entrez ID: | 23065 |
| Nearest Unigene: | Hs.439200 |
| Nearest Refseq: | NM_015047 |
| Nearest Ensembl: | ENSG00000127463 |
| Gene Name: | EMC1 |
| Gene Alias: | CAVIPMR|KIAA0090 |
| Gene Description: | ER membrane protein complex subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
