Difference between revisions of "TSS:Hg 105517.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AY013707:-24 | + | |all_trans=ENST00000334011.10:-10 NR_130125:-10 NM_152635:-10 AY013707:-24 HQ258178:36 KJ903964:36 AY358339:-146 ENST00000622652.1:-165 BC126440:-165 AK096435:-168 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance=- | + | |distance=-10 |
| − | |distance_to_tss= | + | |distance_to_tss=17 |
|end=72893763 | |end=72893763 | ||
|end_of_center_position=72893756 | |end_of_center_position=72893756 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152635 | |nearest_refseq=NM_152635 | ||
|nearest_unigene=Hs.8366 | |nearest_unigene=Hs.8366 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=72893748 | |start=72893748 | ||
|start_of_center_position=72893755 | |start_of_center_position=72893755 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-51(GGCCTTAAAAAA,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000334011.10 NR_130125 NM_152635 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105517.1 | |tss_id=hg_105517.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8WWZ8 |
}} | }} | ||
Revision as of 18:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72893755 |
|---|---|
| End of the center position in the TSS region: | 72893756 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000334011.10 NR_130125 NM_152635 |
|---|---|
| Distance: | -10 |
| Num_trans: | 10 |
| All_trans: | ENST00000334011.10:-10 NR_130125:-10 NM_152635:-10 AY013707:-24 HQ258178:36 KJ903964:36 AY358339:-146 ENST00000622652.1:-165 BC126440:-165 AK096435:-168 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NR_130125 |
| Entrez ID: | 170392 |
| Nearest Unigene: | Hs.8366 |
| Nearest Refseq: | NM_152635 |
| Nearest Ensembl: | ENSG00000138315 |
| Gene Name: | oncoprotein induced transcript 3 |
| Gene Alias: | LZP |
| Gene Description: | oncoprotein induced transcript 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -51(GGCCTTAAAAAA,-,0.00) |
