Difference between revisions of "TSS:Hg 10552.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000416869 | + | |all_trans=ENST00000416869.1:0 ENST00000457075.1:-6 NR_135058:-23 NR_135059:-23 BC070363:-23 ENST00000666544.1:26 ENST00000671472.1:-63 ENST00000654227.1:97 ENST00000660464.1:114 NR_135056:137 NR_135057:137 ENST00000422124.1:242 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 17: | Line 17: | ||
|nearest_refseq=NR_135056 | |nearest_refseq=NR_135056 | ||
|nearest_unigene=Hs.465405 | |nearest_unigene=Hs.465405 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=16889614 | |start=16889614 | ||
|start_of_center_position=16889628 | |start_of_center_position=16889628 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000416869 | + | |transcript_name=ENST00000416869.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10552.1 | |tss_id=hg_10552.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:16, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 16889628 |
|---|---|
| End of the center position in the TSS region: | 16889629 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000416869.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000416869.1:0 ENST00000457075.1:-6 NR_135058:-23 NR_135059:-23 BC070363:-23 ENST00000666544.1:26 ENST00000671472.1:-63 ENST00000654227.1:97 ENST00000660464.1:114 NR_135056:137 NR_135057:137 ENST00000422124.1:242 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NR_135059 |
| Entrez ID: | 105376805 |
| Nearest Unigene: | Hs.465405 |
| Nearest Refseq: | NR_135056 |
| Nearest Ensembl: | ENSG00000238142 |
| Gene Name: | LOC105376805 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105376805 |
| Gene Type: | ncRNA |
| CpG%: | 0.08 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
