Difference between revisions of "TSS:Hg 105536.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_132103:0 NR_132104:0 | + | |all_trans=ENST00000620302.2:0 NR_132103:0 NR_132104:0 ENST00000620559.2:-24 ENST00000442133.9:-24 ENST00000422977.2:-220 BC080555:-221 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:50750 | |hgnc_mgi_id=HGNC:50750 | ||
|nearest_ensembl=ENSG00000221817 | |nearest_ensembl=ENSG00000221817 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_132103 |
|nearest_refseq=NR_132103 | |nearest_refseq=NR_132103 | ||
|nearest_unigene=Hs.434502 | |nearest_unigene=Hs.434502 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=73495744 | |start=73495744 | ||
|start_of_center_position=73495753 | |start_of_center_position=73495753 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NR_132103 NR_132104 | + | |transcript_name=ENST00000620302.2 NR_132103 NR_132104 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105536.1 | |tss_id=hg_105536.1 | ||
Revision as of 18:16, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 73495753 |
|---|---|
| End of the center position in the TSS region: | 73495754 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000620302.2 NR_132103 NR_132104 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000620302.2:0 NR_132103:0 NR_132104:0 ENST00000620559.2:-24 ENST00000442133.9:-24 ENST00000422977.2:-220 BC080555:-221 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_132103 |
| Entrez ID: | 101929145 |
| Nearest Unigene: | Hs.434502 |
| Nearest Refseq: | NR_132103 |
| Nearest Ensembl: | ENSG00000221817 |
| Gene Name: | PPP3CB antisense RNA 1 (head to head) |
| Gene Alias: | USP54-AS1 |
| Gene Description: | PPP3CB antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.08 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
