Difference between revisions of "TSS:Hg 105563.1"
From referenceTSS
| Line 4: | Line 4: | ||
|UPA= | |UPA= | ||
|URK= | |URK= | ||
| − | |all_trans=AK312960:0 AK298560:0 AK297940:0 ENST00000494287.1:7 | + | |all_trans=ENST00000372764.4:0 NM_001319191:0 NM_001145031:0 NM_002658:0 AK312960:0 AK298560:0 AK297940:0 LF209952:5 MA445529:5 ENST00000494287.1:7 BC013575:18 ENST00000446342.5:-21 AH007073:30 M15476:37 D00244:44 LF213792:50 MA449369:50 X02760:70 AY029537:408 DQ893817:411 AB528526:414 CU680620:415 KJ897341:415 KJ905272:415 KR709719:415 BT007391:416 LF212558:-452 MA448135:-452 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=73911140 | |end=73911140 | ||
|end_of_center_position=73911133 | |end_of_center_position=73911133 | ||
|entrez_id=5328 | |entrez_id=5328 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=ATF | + | |gene_alias=ATF{{!}}BDPLT5{{!}}QPD{{!}}UPA{{!}}URK{{!}}u-PA |
| − | |gene_description= | + | |gene_description=plasminogen activator, urokinase |
|gene_id=5328 | |gene_id=5328 | ||
| − | |gene_name= | + | |gene_name=plasminogen activator, urokinase |
|gene_source=HGNC:9052 | |gene_source=HGNC:9052 | ||
|gene_symbol=PLAU | |gene_symbol=PLAU | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:9052 | |hgnc_mgi_id=HGNC:9052 | ||
|nearest_ensembl=ENSG00000122861 | |nearest_ensembl=ENSG00000122861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002658 |
|nearest_refseq=NM_002658 | |nearest_refseq=NM_002658 | ||
|nearest_unigene=Hs.77274 | |nearest_unigene=Hs.77274 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=73911124 | |start=73911124 | ||
|start_of_center_position=73911132 | |start_of_center_position=73911132 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK312960 AK298560 AK297940 | + | |transcript_name=ENST00000372764.4 NM_001319191 NM_001145031 NM_002658 AK312960 AK298560 AK297940 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105563.1 | |tss_id=hg_105563.1 | ||
|tss_score=1 | |tss_score=1 | ||
|u-PA= | |u-PA= | ||
| − | |uniprot_id=B2R7F2 B4DNJ4 | + | |uniprot_id=B2R7F2 B4DNJ4 P00749 Q59GZ8 |
}} | }} | ||
Revision as of 18:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73911132 |
|---|---|
| End of the center position in the TSS region: | 73911133 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372764.4 NM_001319191 NM_001145031 NM_002658 AK312960 AK298560 AK297940 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000372764.4:0 NM_001319191:0 NM_001145031:0 NM_002658:0 AK312960:0 AK298560:0 AK297940:0 LF209952:5 MA445529:5 ENST00000494287.1:7 BC013575:18 ENST00000446342.5:-21 AH007073:30 M15476:37 D00244:44 LF213792:50 MA449369:50 X02760:70 AY029537:408 DQ893817:411 AB528526:414 CU680620:415 KJ897341:415 KJ905272:415 KR709719:415 BT007391:416 LF212558:-452 MA448135:-452 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_002658 |
| Entrez ID: | 5328 |
| Nearest Unigene: | Hs.77274 |
| Nearest Refseq: | NM_002658 |
| Nearest Ensembl: | ENSG00000122861 |
| Gene Name: | plasminogen activator, urokinase |
| Gene Alias: | ATF|BDPLT5|QPD|UPA|URK|u-PA |
| Gene Description: | plasminogen activator, urokinase |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
