Difference between revisions of "TSS:Hg 10565.1"
From referenceTSS
| Line 3: | Line 3: | ||
|KRPPD= | |KRPPD= | ||
|PARK9= | |PARK9= | ||
| − | |all_trans=ENST00000341676.9:0 | + | |all_trans=ENST00000341676.9:0 ENST00000326735.13:0 ENST00000452699.5:0 NM_022089:0 NM_001141973:0 NM_001141974:0 BC030267:0 AK290210:0 AY461712:108 AL354615:120 ENST00000617114.5:135 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=17011965 | |end=17011965 | ||
|end_of_center_position=17011929 | |end_of_center_position=17011929 | ||
|entrez_id=23400 | |entrez_id=23400 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=CLN12 | + | |gene_alias=CLN12{{!}}HSA9947{{!}}KRPPD{{!}}PARK9{{!}}SPG78 |
| − | |gene_description=ATPase 13A2 | + | |gene_description=ATPase cation transporting 13A2 |
|gene_id=23400 | |gene_id=23400 | ||
| − | |gene_name=ATPase 13A2 | + | |gene_name=ATPase cation transporting 13A2 |
|gene_source=HGNC:30213 | |gene_source=HGNC:30213 | ||
|gene_symbol=ATP13A2 | |gene_symbol=ATP13A2 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:30213 | |hgnc_mgi_id=HGNC:30213 | ||
|nearest_ensembl=ENSG00000159363 | |nearest_ensembl=ENSG00000159363 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001141974 |
|nearest_refseq=NM_022089 | |nearest_refseq=NM_022089 | ||
|nearest_unigene=Hs.128866 | |nearest_unigene=Hs.128866 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=17011891 | |start=17011891 | ||
|start_of_center_position=17011928 | |start_of_center_position=17011928 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000341676.9 ENST00000452699.5 | + | |transcript_name=ENST00000341676.9 ENST00000326735.13 ENST00000452699.5 NM_022089 NM_001141973 NM_001141974 BC030267 AK290210 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10565.1 | |tss_id=hg_10565.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9NQ11 |
}} | }} | ||
Revision as of 18:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17011928 |
|---|---|
| End of the center position in the TSS region: | 17011929 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341676.9 ENST00000326735.13 ENST00000452699.5 NM_022089 NM_001141973 NM_001141974 BC030267 AK290210 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000341676.9:0 ENST00000326735.13:0 ENST00000452699.5:0 NM_022089:0 NM_001141973:0 NM_001141974:0 BC030267:0 AK290210:0 AY461712:108 AL354615:120 ENST00000617114.5:135 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001141974 |
| Entrez ID: | 23400 |
| Nearest Unigene: | Hs.128866 |
| Nearest Refseq: | NM_022089 |
| Nearest Ensembl: | ENSG00000159363 |
| Gene Name: | ATPase cation transporting 13A2 |
| Gene Alias: | CLN12|HSA9947|KRPPD|PARK9|SPG78 |
| Gene Description: | ATPase cation transporting 13A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
