Difference between revisions of "TSS:Hg 1058.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|MRT4= | |MRT4= | ||
| − | |all_trans=ENST00000493700.1:0 | + | |all_trans=ENST00000330263.5:0 ENST00000493700.1:0 NM_016183:0 AK027569:0 AF173378:0 BC003013:0 BC006504:0 AK024227:0 AY303790:0 AK126387:0 KJ898840:0 AK295328:0 LF206694:-235 MA442271:-235 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|dJ657E11.4= | |dJ657E11.4= | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=8 |
|end=19251840 | |end=19251840 | ||
|end_of_center_position=19251814 | |end_of_center_position=19251814 | ||
|entrez_id=51154 | |entrez_id=51154 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=C1orf33 | + | |gene_alias=C1orf33{{!}}MRT4{{!}}dJ657E11.4 |
| − | |gene_description= | + | |gene_description=MRT4 homolog, ribosome maturation factor |
|gene_id=51154 | |gene_id=51154 | ||
| − | |gene_name= | + | |gene_name=MRT4 homolog, ribosome maturation factor |
|gene_source=HGNC:18477 | |gene_source=HGNC:18477 | ||
|gene_symbol=MRTO4 | |gene_symbol=MRTO4 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=19251813 | |start_of_center_position=19251813 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000493700.1 | + | |transcript_name=ENST00000330263.5 ENST00000493700.1 NM_016183 AK027569 AF173378 BC003013 BC006504 AK024227 AY303790 AK126387 KJ898840 AK295328 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1058.1 | |tss_id=hg_1058.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DHZ2 | + | |uniprot_id=A0A024RAE1 B4DHZ2 Q9UKD2 |
}} | }} | ||
Revision as of 18:22, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 19251813 |
|---|---|
| End of the center position in the TSS region: | 19251814 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000330263.5 ENST00000493700.1 NM_016183 AK027569 AF173378 BC003013 BC006504 AK024227 AY303790 AK126387 KJ898840 AK295328 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000330263.5:0 ENST00000493700.1:0 NM_016183:0 AK027569:0 AF173378:0 BC003013:0 BC006504:0 AK024227:0 AY303790:0 AK126387:0 KJ898840:0 AK295328:0 LF206694:-235 MA442271:-235 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_016183 |
| Entrez ID: | 51154 |
| Nearest Unigene: | Hs.463797 |
| Nearest Refseq: | NM_016183 |
| Nearest Ensembl: | ENSG00000053372 |
| Gene Name: | MRT4 homolog, ribosome maturation factor |
| Gene Alias: | C1orf33|MRT4|dJ657E11.4 |
| Gene Description: | MRT4 homolog, ribosome maturation factor |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
