Difference between revisions of "TSS:Hg 105843.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000467529.5:0 ENST00000463029.5 | + | |all_trans=ENST00000467529.5:0 ENST00000463029.5:0 AL832397:0 AK310160:0 AK311563:0 BX537803:0 ENST00000476173.5:8 NR_072984:-13 NR_072985:-13 NR_072986:-13 NR_072987:-13 NM_001270374:-13 ENST00000483732.5:41 AK309980:-210 ENST00000372273.7:-222 AL832483:-222 NM_001270369:-235 NM_001270368:-235 NM_001270367:-235 AK300490:-245 |
|bA369J21.6= | |bA369J21.6= | ||
|chr=chr10 | |chr=chr10 | ||
| Line 10: | Line 10: | ||
|entrez_id=80195 | |entrez_id=80195 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=C10orf57 | + | |gene_alias=C10orf57{{!}}bA369J21.6 |
|gene_description=transmembrane protein 254 | |gene_description=transmembrane protein 254 | ||
|gene_id=80195 | |gene_id=80195 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:25804 | |hgnc_mgi_id=HGNC:25804 | ||
|nearest_ensembl=ENSG00000133678 | |nearest_ensembl=ENSG00000133678 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_072986 |
|nearest_refseq=NM_025125 | |nearest_refseq=NM_025125 | ||
|nearest_unigene=Hs.169982 | |nearest_unigene=Hs.169982 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=80079257 | |start=80079257 | ||
|start_of_center_position=80079272 | |start_of_center_position=80079272 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000467529.5 ENST00000463029.5 | + | |transcript_name=ENST00000467529.5 ENST00000463029.5 AL832397 AK310160 AK311563 BX537803 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105843.1 | |tss_id=hg_105843.1 | ||
Revision as of 18:23, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 80079272 |
|---|---|
| End of the center position in the TSS region: | 80079273 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000467529.5 ENST00000463029.5 AL832397 AK310160 AK311563 BX537803 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000467529.5:0 ENST00000463029.5:0 AL832397:0 AK310160:0 AK311563:0 BX537803:0 ENST00000476173.5:8 NR_072984:-13 NR_072985:-13 NR_072986:-13 NR_072987:-13 NM_001270374:-13 ENST00000483732.5:41 AK309980:-210 ENST00000372273.7:-222 AL832483:-222 NM_001270369:-235 NM_001270368:-235 NM_001270367:-235 AK300490:-245 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NR_072986 |
| Entrez ID: | 80195 |
| Nearest Unigene: | Hs.169982 |
| Nearest Refseq: | NM_025125 |
| Nearest Ensembl: | ENSG00000133678 |
| Gene Name: | transmembrane protein 254 |
| Gene Alias: | C10orf57|bA369J21.6 |
| Gene Description: | transmembrane protein 254 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
