Difference between revisions of "TSS:Hg 106006.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SR= | |SR= | ||
| − | |all_trans=ENST00000465679.5:0 ENST00000348795.8:0 | + | |all_trans=ENST00000372017.4:0 ENST00000465679.5:0 ENST00000348795.8:0 NM_003087:0 AK223367:0 AK311652:0 BC014098:0 AK312141:17 AF017256:25 AF411524:56 EU019993:57 DQ895719:62 EU176715:62 DQ892334:62 DQ892505:62 AF010126:62 AB464279:65 KJ892170:66 CR541790:67 CR541788:67 LF210007:-112 MA445584:-112 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-5 |
|end=86958631 | |end=86958631 | ||
|end_of_center_position=86958595 | |end_of_center_position=86958595 | ||
|entrez_id=6623 | |entrez_id=6623 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=BCSG1 | + | |gene_alias=BCSG1{{!}}SR |
|gene_description=synuclein gamma | |gene_description=synuclein gamma | ||
|gene_id=6623 | |gene_id=6623 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003087 | |nearest_refseq=NM_003087 | ||
|nearest_unigene=Hs.349470 | |nearest_unigene=Hs.349470 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=86958557 | |start=86958557 | ||
|start_of_center_position=86958594 | |start_of_center_position=86958594 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000465679.5 ENST00000348795.8 | + | |transcript_name=ENST00000372017.4 ENST00000465679.5 ENST00000348795.8 NM_003087 AK223367 AK311652 BC014098 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106006.1 | |tss_id=hg_106006.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=F8W754 | + | |uniprot_id=F8W754 Q6FHG5 |
}} | }} | ||
Revision as of 18:27, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 86958594 |
|---|---|
| End of the center position in the TSS region: | 86958595 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000372017.4 ENST00000465679.5 ENST00000348795.8 NM_003087 AK223367 AK311652 BC014098 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000372017.4:0 ENST00000465679.5:0 ENST00000348795.8:0 NM_003087:0 AK223367:0 AK311652:0 BC014098:0 AK312141:17 AF017256:25 AF411524:56 EU019993:57 DQ895719:62 EU176715:62 DQ892334:62 DQ892505:62 AF010126:62 AB464279:65 KJ892170:66 CR541790:67 CR541788:67 LF210007:-112 MA445584:-112 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_003087 |
| Entrez ID: | 6623 |
| Nearest Unigene: | Hs.349470 |
| Nearest Refseq: | NM_003087 |
| Nearest Ensembl: | ENSG00000173267 |
| Gene Name: | synuclein gamma |
| Gene Alias: | BCSG1|SR |
| Gene Description: | synuclein gamma |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
