Difference between revisions of "TSS:Hg 106054.1"
From referenceTSS
| Line 10: | Line 10: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=203590 |
|end=88067219 | |end=88067219 | ||
|end_of_center_position=88067216 | |end_of_center_position=88067216 | ||
|entrez_id=5728 | |entrez_id=5728 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=10q23del | + | |gene_alias=10q23del{{!}}BZS{{!}}CWS1{{!}}DEC{{!}}GLM2{{!}}MHAM{{!}}MMAC1{{!}}PTEN1{{!}}PTENbeta{{!}}TEP1 |
|gene_description=phosphatase and tensin homolog | |gene_description=phosphatase and tensin homolog | ||
|gene_name=PTEN | |gene_name=PTEN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000171862 | |nearest_ensembl=ENSG00000171862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304718 |
|nearest_refseq=NM_000314 | |nearest_refseq=NM_000314 | ||
|nearest_unigene=Hs.500466 | |nearest_unigene=Hs.500466 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=88067215 | |start_of_center_position=88067215 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-42(GTTTTTAGAGGT,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 88067215 |
|---|---|
| End of the center position in the TSS region: | 88067216 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 203590 |
|---|---|
| Nearest PromoterID: | NM_001304718 |
| Entrez ID: | 5728 |
| Nearest Unigene: | Hs.500466 |
| Nearest Refseq: | NM_000314 |
| Nearest Ensembl: | ENSG00000171862 |
| Gene Name: | PTEN |
| Gene Alias: | 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 |
| Gene Description: | phosphatase and tensin homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -42(GTTTTTAGAGGT,+,0.00) |
