Difference between revisions of "TSS:Hg 106127.1"
From referenceTSS
| Line 7: | Line 7: | ||
|P60= | |P60= | ||
|RIG-G= | |RIG-G= | ||
| − | |all_trans=AF083470:21 AK312675:24 U52513:38 AK290427:-56 | + | |all_trans=ENST00000681277.1:7 LF211307:21 MA446884:21 AF083470:21 ENST00000679923.1:22 ENST00000680085.1:22 ENST00000371818.9:22 ENST00000680779.1:22 NM_001549:22 NM_001289758:22 ENST00000679438.1:-24 AK312675:24 LF345454:34 MA581031:34 U52513:38 AK290427:-56 LP895789:-120 |
|chr=chr10 | |chr=chr10 | ||
|cig41= | |cig41= | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=7 |
| − | |distance_to_tss= | + | |distance_to_tss=-27 |
|end=89327975 | |end=89327975 | ||
|end_of_center_position=89327970 | |end_of_center_position=89327970 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=CIG-49 | + | |gene_alias=CIG-49{{!}}GARG-49{{!}}IFI60{{!}}IFIT4{{!}}IRG2{{!}}ISG60{{!}}P60{{!}}RIG-G{{!}}cig41 |
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
|gene_id=3437 | |gene_id=3437 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_001549 | |nearest_refseq=NM_001549 | ||
|nearest_unigene=Hs.47338 | |nearest_unigene=Hs.47338 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=89327964 | |start=89327964 | ||
|start_of_center_position=89327969 | |start_of_center_position=89327969 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-70(TCCCCTAAAAGC,-,0.00),-6(CCCTTTATATAG,+,0.00),-6(CCCTTTATATAG,-,0.00),-4(CTTTATATAGTT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000681277.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106127.1 | |tss_id=hg_106127.1 | ||
Revision as of 18:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89327969 |
|---|---|
| End of the center position in the TSS region: | 89327970 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000681277.1 |
|---|---|
| Distance: | 7 |
| Num_trans: | 17 |
| All_trans: | ENST00000681277.1:7 LF211307:21 MA446884:21 AF083470:21 ENST00000679923.1:22 ENST00000680085.1:22 ENST00000371818.9:22 ENST00000680779.1:22 NM_001549:22 NM_001289758:22 ENST00000679438.1:-24 AK312675:24 LF345454:34 MA581031:34 U52513:38 AK290427:-56 LP895789:-120 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NM_001549 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Alias: | CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -70(TCCCCTAAAAGC,-,0.00),-6(CCCTTTATATAG,+,0.00),-6(CCCTTTATATAG,-,0.00),-4(CTTTATATAGTT,+,0.00) |
