Difference between revisions of "TSS:Hg 106129.1"
From referenceTSS
| Line 7: | Line 7: | ||
|P60= | |P60= | ||
|RIG-G= | |RIG-G= | ||
| − | |all_trans=U52513:0 AK312675:-11 | + | |all_trans=U52513:0 LF345454:-1 MA581031:-1 AK312675:-11 ENST00000679923.1:-13 ENST00000680085.1:-13 ENST00000371818.9:-13 ENST00000680779.1:-13 NM_001549:-13 NM_001289758:-13 LF211307:-14 MA446884:-14 AF083470:-14 ENST00000681277.1:-28 ENST00000679438.1:-69 AK290427:-101 LP895789:-165 LF345455:499 MA581032:499 |
|chr=chr10 | |chr=chr10 | ||
|cig41= | |cig41= | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=18 |
|end=89328020 | |end=89328020 | ||
|end_of_center_position=89328015 | |end_of_center_position=89328015 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=CIG-49 | + | |gene_alias=CIG-49{{!}}GARG-49{{!}}IFI60{{!}}IFIT4{{!}}IRG2{{!}}ISG60{{!}}P60{{!}}RIG-G{{!}}cig41 |
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
|gene_id=3437 | |gene_id=3437 | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:5411 | |hgnc_mgi_id=HGNC:5411 | ||
|nearest_ensembl=ENSG00000119917 | |nearest_ensembl=ENSG00000119917 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001289758 |
|nearest_refseq=NM_001549 | |nearest_refseq=NM_001549 | ||
|nearest_unigene=Hs.47338 | |nearest_unigene=Hs.47338 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=89328009 | |start=89328009 | ||
|start_of_center_position=89328014 | |start_of_center_position=89328014 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-51(CCCTTTATATAG,+,0.00),-51(CCCTTTATATAG,-,0.00),-49(CTTTATATAGTT,+,0.00) |
|transcript_name=U52513 | |transcript_name=U52513 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 18:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89328014 |
|---|---|
| End of the center position in the TSS region: | 89328015 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U52513 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | U52513:0 LF345454:-1 MA581031:-1 AK312675:-11 ENST00000679923.1:-13 ENST00000680085.1:-13 ENST00000371818.9:-13 ENST00000680779.1:-13 NM_001549:-13 NM_001289758:-13 LF211307:-14 MA446884:-14 AF083470:-14 ENST00000681277.1:-28 ENST00000679438.1:-69 AK290427:-101 LP895789:-165 LF345455:499 MA581032:499 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001289758 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Alias: | CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -51(CCCTTTATATAG,+,0.00),-51(CCCTTTATATAG,-,0.00),-49(CTTTATATAGTT,+,0.00) |
