Difference between revisions of "TSS:Hg 106216.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=17969 |
|end=91238633 | |end=91238633 | ||
|end_of_center_position=91238632 | |end_of_center_position=91238632 | ||
| Line 13: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000180628 | |nearest_ensembl=ENSG00000180628 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_032373 |
|nearest_refseq=NM_032373 | |nearest_refseq=NM_032373 | ||
|nearest_unigene=Hs.500512 | |nearest_unigene=Hs.500512 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=91238631 | |start_of_center_position=91238631 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-74(GCTTTTAAAATC,+,0.00),-73(CTTTTAAAATCC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:32, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 91238631 |
|---|---|
| End of the center position in the TSS region: | 91238632 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 17969 |
|---|---|
| Nearest PromoterID: | NM_032373 |
| Entrez ID: | 84333 |
| Nearest Unigene: | Hs.500512 |
| Nearest Refseq: | NM_032373 |
| Nearest Ensembl: | ENSG00000180628 |
| Gene Name: | PCGF5 |
| Gene Alias: | RNF159 |
| Gene Description: | polycomb group ring finger 5 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(GCTTTTAAAATC,+,0.00),-73(CTTTTAAAATCC,+,0.00) |
