Difference between revisions of "TSS:Hg 106348.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CYPIIC9= | |CYPIIC9= | ||
|P450IIC9= | |P450IIC9= | ||
| − | |all_trans=ENST00000461906.1:0 | + | |all_trans=ENST00000461906.1:0 ENST00000260682.8:0 NM_000771:0 BC020754:0 AK289420:0 AK298458:0 BC070317:0 M61855:7 M61857:9 ENST00000643112.1:16 KJ901369:19 KJ891014:19 KR711924:19 KR711925:19 KR711926:19 KR711927:19 BC125054:19 D00173:28 M21939:33 M15331:34 S46963:56 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 13: | Line 13: | ||
|entrez_id=1559 | |entrez_id=1559 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=CPC9 | + | |gene_alias=CPC9{{!}}CYP2C{{!}}CYP2C10{{!}}CYPIIC9{{!}}P450IIC9 |
|gene_description=cytochrome P450 family 2 subfamily C member 9 | |gene_description=cytochrome P450 family 2 subfamily C member 9 | ||
|gene_id=1559 | |gene_id=1559 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_000771 | |nearest_refseq=NM_000771 | ||
|nearest_unigene=Hs.282624 | |nearest_unigene=Hs.282624 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=94938649 | |start=94938649 | ||
|start_of_center_position=94938656 | |start_of_center_position=94938656 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(TGTTATAAAAGG,-,0.00) |
| − | |transcript_name=ENST00000461906.1 NM_000771 | + | |transcript_name=ENST00000461906.1 ENST00000260682.8 NM_000771 BC020754 AK289420 AK298458 BC070317 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_106348.1 | |tss_id=hg_106348.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DPQ9 S5RV20 | + | |uniprot_id=B4DPQ9 P11712 S5RV20 |
}} | }} | ||
Revision as of 18:35, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 94938656 |
|---|---|
| End of the center position in the TSS region: | 94938657 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000461906.1 ENST00000260682.8 NM_000771 BC020754 AK289420 AK298458 BC070317 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000461906.1:0 ENST00000260682.8:0 NM_000771:0 BC020754:0 AK289420:0 AK298458:0 BC070317:0 M61855:7 M61857:9 ENST00000643112.1:16 KJ901369:19 KJ891014:19 KR711924:19 KR711925:19 KR711926:19 KR711927:19 BC125054:19 D00173:28 M21939:33 M15331:34 S46963:56 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_000771 |
| Entrez ID: | 1559 |
| Nearest Unigene: | Hs.282624 |
| Nearest Refseq: | NM_000771 |
| Nearest Ensembl: | ENSG00000138109 |
| Gene Name: | cytochrome P450 family 2 subfamily C member 9 |
| Gene Alias: | CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 |
| Gene Description: | cytochrome P450 family 2 subfamily C member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(TGTTATAAAAGG,-,0.00) |
