Difference between revisions of "TSS:Hg 106451.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HP3= | |HP3= | ||
|NPL2= | |NPL2= | ||
| − | |all_trans= | + | |all_trans=ENST00000370646.9:-51 NM_138413:-51 ENST00000370649.3:-66 AK293733:-66 BC057821:-69 BC045550:-76 NM_001134670:-95 BC011916:-95 ENST00000370647.8:-97 ENST00000465608.1:-117 AK094791:-117 AK289440:223 CU692268:249 EU831694:249 EU831704:249 EU831607:249 EU831618:249 KJ906404:249 CU691258:249 HQ448020:249 KJ899986:249 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance=- | + | |distance=-51 |
| − | |distance_to_tss= | + | |distance_to_tss=58 |
|end=97584455 | |end=97584455 | ||
|end_of_center_position=97584448 | |end_of_center_position=97584448 | ||
|entrez_id=112817 | |entrez_id=112817 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=C10orf65 | + | |gene_alias=C10orf65{{!}}DHDPS2{{!}}DHDPSL{{!}}HP3{{!}}NPL2 |
|gene_description=4-hydroxy-2-oxoglutarate aldolase 1 | |gene_description=4-hydroxy-2-oxoglutarate aldolase 1 | ||
| − | |gene_id= | + | |gene_id=112817 |
| − | |gene_name= | + | |gene_name=4-hydroxy-2-oxoglutarate aldolase 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:25155 |
| − | |gene_symbol= | + | |gene_symbol=HOGA1 |
| − | |gene_synonyms= | + | |gene_synonyms=DHDPS2 FLJ37472 NPL2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:25155 |
|nearest_ensembl=ENSG00000241935 | |nearest_ensembl=ENSG00000241935 | ||
|nearest_promoter_id=NM_138413 | |nearest_promoter_id=NM_138413 | ||
|nearest_refseq=NM_138413 | |nearest_refseq=NM_138413 | ||
|nearest_unigene=Hs.180346 | |nearest_unigene=Hs.180346 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=97584439 | |start=97584439 | ||
|start_of_center_position=97584447 | |start_of_center_position=97584447 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000370646.9 NM_138413 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106451.1 | |tss_id=hg_106451.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q86XE5 |
}} | }} | ||
Revision as of 18:38, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97584447 |
|---|---|
| End of the center position in the TSS region: | 97584448 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000370646.9 NM_138413 |
|---|---|
| Distance: | -51 |
| Num_trans: | 21 |
| All_trans: | ENST00000370646.9:-51 NM_138413:-51 ENST00000370649.3:-66 AK293733:-66 BC057821:-69 BC045550:-76 NM_001134670:-95 BC011916:-95 ENST00000370647.8:-97 ENST00000465608.1:-117 AK094791:-117 AK289440:223 CU692268:249 EU831694:249 EU831704:249 EU831607:249 EU831618:249 KJ906404:249 CU691258:249 HQ448020:249 KJ899986:249 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_138413 |
| Entrez ID: | 112817 |
| Nearest Unigene: | Hs.180346 |
| Nearest Refseq: | NM_138413 |
| Nearest Ensembl: | ENSG00000241935 |
| Gene Name: | 4-hydroxy-2-oxoglutarate aldolase 1 |
| Gene Alias: | C10orf65|DHDPS2|DHDPSL|HP3|NPL2 |
| Gene Description: | 4-hydroxy-2-oxoglutarate aldolase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
