Difference between revisions of "TSS:Hg 10647.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000375254. | + | |all_trans=ENST00000375254.8:174 NM_020765:174 BC041137:184 AF348492:192 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=174 |
|distance_to_tss=73 | |distance_to_tss=73 | ||
|end=19210478 | |end=19210478 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=EMC1 antisense RNA 1 |
|gene_id=23352 | |gene_id=23352 | ||
|gene_name=ubiquitin protein ligase E3 component n-recognin 4 | |gene_name=ubiquitin protein ligase E3 component n-recognin 4 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:30313 | |hgnc_mgi_id=HGNC:30313 | ||
|nearest_ensembl=ENSG00000230424 | |nearest_ensembl=ENSG00000230424 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_135114 |
|nearest_refseq=NR_135114 | |nearest_refseq=NR_135114 | ||
|nearest_unigene=Hs.660534 | |nearest_unigene=Hs.660534 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=19210439 | |start=19210439 | ||
|start_of_center_position=19210458 | |start_of_center_position=19210458 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000375254. | + | |transcript_name=ENST00000375254.8 NM_020765 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10647.1 | |tss_id=hg_10647.1 | ||
Revision as of 18:38, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 19210458 |
|---|---|
| End of the center position in the TSS region: | 19210459 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375254.8 NM_020765 |
|---|---|
| Distance: | 174 |
| Num_trans: | 4 |
| All_trans: | ENST00000375254.8:174 NM_020765:174 BC041137:184 AF348492:192 |
TATA-Box annotation
| Distance to TSS: | 73 |
|---|---|
| Nearest PromoterID: | NR_135114 |
| Entrez ID: | 101927895 |
| Nearest Unigene: | Hs.660534 |
| Nearest Refseq: | NR_135114 |
| Nearest Ensembl: | ENSG00000230424 |
| Gene Name: | ubiquitin protein ligase E3 component n-recognin 4 |
| Gene Alias: | - |
| Gene Description: | EMC1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
