Difference between revisions of "TSS:Hg 107446.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000494222.5:0 ENST00000368990.7:0 ENST00000368989.6:0 | + | |all_trans=ENST00000494222.5:0 ENST00000368990.7:0 ENST00000368989.6:0 NM_001377249:0 NM_001377250:0 NM_001377235:0 NM_001377234:0 NM_001377232:0 NM_001377231:0 NM_001377242:0 NM_001377248:0 NM_001377247:0 NM_001377246:0 NM_001377245:0 NM_001377244:0 NM_001377243:0 NM_001001974:0 NM_001377241:0 NM_001377240:0 NM_001377258:0 NM_001377257:0 NM_001377256:0 NM_001377255:0 NM_001377254:0 NM_001377253:0 NM_001377252:0 NM_001377251:0 NM_001330178:0 NM_001377238:0 NM_001377237:0 NM_001377230:0 NM_021622:0 NR_165160:0 NR_165161:0 NR_165162:0 NR_165164:0 NR_165165:0 AK314660:0 BC001136:0 ENST00000463663.6:68 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=18 |
|end=122374766 | |end=122374766 | ||
|end_of_center_position=122374726 | |end_of_center_position=122374726 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:14335 | |hgnc_mgi_id=HGNC:14335 | ||
|nearest_ensembl=ENSG00000107679 | |nearest_ensembl=ENSG00000107679 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001001974 |
|nearest_refseq=NM_021622 | |nearest_refseq=NM_021622 | ||
|nearest_unigene=Hs.643512 | |nearest_unigene=Hs.643512 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=122374685 | |start=122374685 | ||
|start_of_center_position=122374725 | |start_of_center_position=122374725 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000494222.5 ENST00000368990.7 ENST00000368989.6 | + | |transcript_name=ENST00000494222.5 ENST00000368990.7 ENST00000368989.6 NM_001377249 NM_001377250 NM_001377235 NM_001377234 NM_001377232 NM_001377231 NM_001377242 NM_001377248 NM_001377247 NM_001377246 NM_001377245 NM_001377244 NM_001377243 NM_001001974 NM_001377241 NM_001377240 NM_001377258 NM_001377257 NM_001377256 NM_001377255 NM_001377254 NM_001377253 NM_001377252 NM_001377251 NM_001330178 NM_001377238 NM_001377237 NM_001377230 NM_021622 NR_165160 NR_165161 NR_165162 NR_165164 NR_165165 AK314660 BC001136 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_107446.1 | |tss_id=hg_107446.1 | ||
Revision as of 19:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122374725 |
|---|---|
| End of the center position in the TSS region: | 122374726 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000494222.5 ENST00000368990.7 ENST00000368989.6 NM_001377249 NM_001377250 NM_001377235 NM_001377234 NM_001377232 NM_001377231 NM_001377242 NM_001377248 NM_001377247 NM_001377246 NM_001377245 NM_001377244 NM_001377243 NM_001001974 NM_001377241 NM_001377240 NM_001377258 NM_001377257 NM_001377256 NM_001377255 NM_001377254 NM_001377253 NM_001377252 NM_001377251 NM_001330178 NM_001377238 NM_001377237 NM_001377230 NM_021622 NR_165160 NR_165161 NR_165162 NR_165164 NR_165165 AK314660 BC001136 |
|---|---|
| Distance: | 0 |
| Num_trans: | 40 |
| All_trans: | ENST00000494222.5:0 ENST00000368990.7:0 ENST00000368989.6:0 NM_001377249:0 NM_001377250:0 NM_001377235:0 NM_001377234:0 NM_001377232:0 NM_001377231:0 NM_001377242:0 NM_001377248:0 NM_001377247:0 NM_001377246:0 NM_001377245:0 NM_001377244:0 NM_001377243:0 NM_001001974:0 NM_001377241:0 NM_001377240:0 NM_001377258:0 NM_001377257:0 NM_001377256:0 NM_001377255:0 NM_001377254:0 NM_001377253:0 NM_001377252:0 NM_001377251:0 NM_001330178:0 NM_001377238:0 NM_001377237:0 NM_001377230:0 NM_021622:0 NR_165160:0 NR_165161:0 NR_165162:0 NR_165164:0 NR_165165:0 AK314660:0 BC001136:0 ENST00000463663.6:68 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001001974 |
| Entrez ID: | 59338 |
| Nearest Unigene: | Hs.643512 |
| Nearest Refseq: | NM_021622 |
| Nearest Ensembl: | ENSG00000107679 |
| Gene Name: | pleckstrin homology domain containing A1 |
| Gene Alias: | TAPP1 |
| Gene Description: | pleckstrin homology domain containing A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
