Difference between revisions of "TSS:Hg 107633.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PTPE= | |PTPE= | ||
|R-PTP-EPSILON= | |R-PTP-EPSILON= | ||
| − | |all_trans=ENST00000254667. | + | |all_trans=ENST00000254667.8:0 NM_006504:0 NM_001323356:0 NM_001316676:0 NM_001323355:0 BC031078:0 AF406557:4 ENST00000442830.5:30 BC050062:31 X54134:167 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-24 |
|end=127907122 | |end=127907122 | ||
|end_of_center_position=127907079 | |end_of_center_position=127907079 | ||
|entrez_id=5791 | |entrez_id=5791 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=HPTPE | + | |gene_alias=HPTPE{{!}}PTPE{{!}}R-PTP-EPSILON |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase receptor type E |
|gene_id=5791 | |gene_id=5791 | ||
| − | |gene_name= | + | |gene_name=protein tyrosine phosphatase receptor type E |
|gene_source=HGNC:9669 | |gene_source=HGNC:9669 | ||
|gene_symbol=PTPRE | |gene_symbol=PTPRE | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:9669 | |hgnc_mgi_id=HGNC:9669 | ||
|nearest_ensembl=ENSG00000132334 | |nearest_ensembl=ENSG00000132334 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323355 |
|nearest_refseq=NM_006504 | |nearest_refseq=NM_006504 | ||
|nearest_unigene=Hs.127022 | |nearest_unigene=Hs.127022 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=127907078 | |start_of_center_position=127907078 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000254667. | + | |transcript_name=ENST00000254667.8 NM_006504 NM_001323356 NM_001316676 NM_001323355 BC031078 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_107633.1 | |tss_id=hg_107633.1 | ||
Revision as of 19:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127907078 |
|---|---|
| End of the center position in the TSS region: | 127907079 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000254667.8 NM_006504 NM_001323356 NM_001316676 NM_001323355 BC031078 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000254667.8:0 NM_006504:0 NM_001323356:0 NM_001316676:0 NM_001323355:0 BC031078:0 AF406557:4 ENST00000442830.5:30 BC050062:31 X54134:167 |
TATA-Box annotation
| Distance to TSS: | -24 |
|---|---|
| Nearest PromoterID: | NM_001323355 |
| Entrez ID: | 5791 |
| Nearest Unigene: | Hs.127022 |
| Nearest Refseq: | NM_006504 |
| Nearest Ensembl: | ENSG00000132334 |
| Gene Name: | protein tyrosine phosphatase receptor type E |
| Gene Alias: | HPTPE|PTPE|R-PTP-EPSILON |
| Gene Description: | protein tyrosine phosphatase receptor type E |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
