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Difference between revisions of "TSS:Hg 107651.1"

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Line 2: Line 2:
 
|PTPE=
 
|PTPE=
 
|R-PTP-EPSILON=
 
|R-PTP-EPSILON=
|all_trans=ENST00000306042.9:0 uc001lkd.4:0 NM_130435:-11 BC071573:12 U36623:14 AK290414:14 BX648180:-17 ENST00000487428.1:20 uc057wuu.1:20 ENST00000495530.5:30 uc057wuv.1:30 ENST00000479896.1:32 uc057wuw.1:32 AJ430580:32 AJ315969:41 ENST00000467366.1:-154 uc057wut.1:-154
+
|all_trans=ENST00000306042.9:0 BC071573:12 NM_001323357:13 NM_130435:13 U36623:14 AK290414:14 BX648180:-17 ENST00000487428.1:20 ENST00000495530.5:30 ENST00000479896.1:32 AJ430580:32 AJ315969:41 ENST00000467366.1:-154
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.025
 
|cpg_percent=0.025
 
|distance=0
 
|distance=0
|distance_to_tss=30
+
|distance_to_tss=-33
 
|end=128047599
 
|end=128047599
 
|end_of_center_position=128047580
 
|end_of_center_position=128047580
 
|entrez_id=5791
 
|entrez_id=5791
 
|gc_percent=0.616915
 
|gc_percent=0.616915
|gene_alias=HPTPE
+
|gene_alias=HPTPE{{!}}PTPE{{!}}R-PTP-EPSILON
|gene_description="protein tyrosine phosphatase, receptor type E"
+
|gene_description=protein tyrosine phosphatase receptor type E
 
|gene_id=5791
 
|gene_id=5791
|gene_name="protein tyrosine phosphatase, receptor type E"
+
|gene_name=protein tyrosine phosphatase receptor type E
 
|gene_source=HGNC:9669
 
|gene_source=HGNC:9669
 
|gene_symbol=PTPRE
 
|gene_symbol=PTPRE
Line 21: Line 21:
 
|hgnc_mgi_id=HGNC:9669
 
|hgnc_mgi_id=HGNC:9669
 
|nearest_ensembl=ENSG00000132334
 
|nearest_ensembl=ENSG00000132334
|nearest_promoter_id=NM_001323357
+
|nearest_promoter_id=NM_130435
 
|nearest_refseq=NM_006504
 
|nearest_refseq=NM_006504
 
|nearest_unigene=Hs.127022
 
|nearest_unigene=Hs.127022
|num_trans=17
+
|num_trans=13
 
|species=human
 
|species=human
 
|start=128047559
 
|start=128047559
 
|start_of_center_position=128047579
 
|start_of_center_position=128047579
 
|strand=+
 
|strand=+
|transcript_name=ENST00000306042.9 uc001lkd.4
+
|transcript_name=ENST00000306042.9
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_107651.1
 
|tss_id=hg_107651.1

Revision as of 19:06, 15 June 2021

Basic information about the TSS


TSS ID:hg_107651.1
Species:human
Chr:chr10
TSS Classification:yes
Start:128047559
End:128047599
Strand:+
TSS Score:1
Start of the center position in the TSS region:128047579
End of the center position in the TSS region:128047580



Gene and protein annotation


Transcript_name:ENST00000306042.9
Distance:0
GeneID:5791
HGNC/MGI_ID:HGNC:9669
UniProt_ID:P23469
Gene_name:protein tyrosine phosphatase receptor type E
Gene_symbol:PTPRE
Gene_synonyms:PTPE
Gene_source:HGNC:9669



Transcript annotation


Transcript_name:ENST00000306042.9
Distance:0
Num_trans:13
All_trans:ENST00000306042.9:0 BC071573:12 NM_001323357:13 NM_130435:13 U36623:14 AK290414:14 BX648180:-17 ENST00000487428.1:20 ENST00000495530.5:30 ENST00000479896.1:32 AJ430580:32 AJ315969:41 ENST00000467366.1:-154



TATA-Box annotation


Distance to TSS:-33
Nearest PromoterID:NM_130435
Entrez ID:5791
Nearest Unigene:Hs.127022
Nearest Refseq:NM_006504
Nearest Ensembl:ENSG00000132334
Gene Name:protein tyrosine phosphatase receptor type E
Gene Alias:HPTPE|PTPE|R-PTP-EPSILON
Gene Description:protein tyrosine phosphatase receptor type E
Gene Type:protein-coding
CpG%:0.025
GC%:0.616915
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):