Difference between revisions of "TSS:Hg 108742.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SSH3BP= | |SSH3BP= | ||
|SSH3BP1= | |SSH3BP1= | ||
| − | |all_trans=ENST00000376142.6:0 ENST00000359188.8:0 | + | |all_trans=ENST00000376142.6:0 ENST00000359188.8:0 ENST00000376140.4:0 NM_001012750:0 AF006516:0 BC024254:0 AB209268:0 BC013238:0 U87166:0 AK291823:0 ENST00000376139.6:-2 ENST00000376160.5:-4 AF260262:-12 AK298646:-15 ENST00000376166.5:-17 ENST00000346832.10:-17 AK126803:-17 LF346276:25 MA581853:25 ENST00000376170.8:31 AF001628:33 AK296751:38 AF540955:48 FJ380057:60 FJ380058:60 FJ380059:60 AB529081:60 ENST00000376138.7:-61 AB040151:-61 KJ904640:61 ENST00000536334.5:-118 ENST00000490841.6:-118 ENST00000376137.8:-118 NM_001348029:-118 NM_001348030:-118 NM_001178125:-118 NM_001178119:-118 NM_001178121:-118 NM_001178122:-118 NM_001178123:-118 NM_001178124:-118 NM_001012751:-118 NM_001178120:-118 NM_001348034:-118 NM_001348033:-118 NM_001178116:-118 NM_001348032:-118 NM_001348031:-118 NM_005470:-118 NM_001012752:-118 NR_145410:-118 LF383677:-118 MA619254:-118 LF346275:125 MA581852:125 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 14: | Line 14: | ||
|entrez_id=10006 | |entrez_id=10006 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=ABI-1 | + | |gene_alias=ABI-1{{!}}ABLBP4{{!}}E3B1{{!}}NAP1BP{{!}}SSH3BP{{!}}SSH3BP1 |
|gene_description=abl interactor 1 | |gene_description=abl interactor 1 | ||
|gene_id=10006 | |gene_id=10006 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:11320 | |hgnc_mgi_id=HGNC:11320 | ||
|nearest_ensembl=ENSG00000136754 | |nearest_ensembl=ENSG00000136754 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001178124 |
|nearest_refseq=NM_005470 | |nearest_refseq=NM_005470 | ||
|nearest_unigene=Hs.508148 | |nearest_unigene=Hs.508148 | ||
| − | |num_trans= | + | |num_trans=55 |
|species=human | |species=human | ||
|start=26860922 | |start=26860922 | ||
|start_of_center_position=26860945 | |start_of_center_position=26860945 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000376142.6 ENST00000359188.8 | + | |transcript_name=ENST00000376142.6 ENST00000359188.8 ENST00000376140.4 NM_001012750 AF006516 BC024254 AB209268 BC013238 U87166 AK291823 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_108742.1 | |tss_id=hg_108742.1 | ||
Revision as of 19:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26860945 |
|---|---|
| End of the center position in the TSS region: | 26860946 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376142.6 ENST00000359188.8 ENST00000376140.4 NM_001012750 AF006516 BC024254 AB209268 BC013238 U87166 AK291823 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55 |
| All_trans: | ENST00000376142.6:0 ENST00000359188.8:0 ENST00000376140.4:0 NM_001012750:0 AF006516:0 BC024254:0 AB209268:0 BC013238:0 U87166:0 AK291823:0 ENST00000376139.6:-2 ENST00000376160.5:-4 AF260262:-12 AK298646:-15 ENST00000376166.5:-17 ENST00000346832.10:-17 AK126803:-17 LF346276:25 MA581853:25 ENST00000376170.8:31 AF001628:33 AK296751:38 AF540955:48 FJ380057:60 FJ380058:60 FJ380059:60 AB529081:60 ENST00000376138.7:-61 AB040151:-61 KJ904640:61 ENST00000536334.5:-118 ENST00000490841.6:-118 ENST00000376137.8:-118 NM_001348029:-118 NM_001348030:-118 NM_001178125:-118 NM_001178119:-118 NM_001178121:-118 NM_001178122:-118 NM_001178123:-118 NM_001178124:-118 NM_001012751:-118 NM_001178120:-118 NM_001348034:-118 NM_001348033:-118 NM_001178116:-118 NM_001348032:-118 NM_001348031:-118 NM_005470:-118 NM_001012752:-118 NR_145410:-118 LF383677:-118 MA619254:-118 LF346275:125 MA581852:125 |
TATA-Box annotation
| Distance to TSS: | 141 |
|---|---|
| Nearest PromoterID: | NM_001178124 |
| Entrez ID: | 10006 |
| Nearest Unigene: | Hs.508148 |
| Nearest Refseq: | NM_005470 |
| Nearest Ensembl: | ENSG00000136754 |
| Gene Name: | abl interactor 1 |
| Gene Alias: | ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 |
| Gene Description: | abl interactor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
