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Difference between revisions of "TSS:Hg 109290.1"

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Line 2: Line 2:
 
|PDZK4=
 
|PDZK4=
 
|PDZK5C=
 
|PDZK5C=
|all_trans=ENST00000468556.1:17 uc057tcp.1:17 ENST00000492045.1:59 uc057tcq.1:59 ENST00000305531.3:-76 NM_001318191:-76 uc001jgh.5:-76 AK123038:-76
+
|all_trans=ENST00000468556.1:17 ENST00000492045.1:59 ENST00000305531.3:-76 NM_001318191:-76 AK123038:-76
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.03
 
|cpg_percent=0.03
Line 11: Line 11:
 
|entrez_id=143162
 
|entrez_id=143162
 
|gc_percent=0.597015
 
|gc_percent=0.597015
|gene_alias=PDZD5C
+
|gene_alias=PDZD5C{{!}}PDZK4{{!}}PDZK5C
 
|gene_description=FERM and PDZ domain containing 2
 
|gene_description=FERM and PDZ domain containing 2
 
|gene_id=143162
 
|gene_id=143162
Line 24: Line 24:
 
|nearest_refseq=NM_152428
 
|nearest_refseq=NM_152428
 
|nearest_unigene=Hs.664786
 
|nearest_unigene=Hs.664786
|num_trans=8
+
|num_trans=5
 
|species=human
 
|species=human
 
|start=48251669
 
|start=48251669
 
|start_of_center_position=48251675
 
|start_of_center_position=48251675
 
|strand=-
 
|strand=-
|transcript_name=ENST00000468556.1 uc057tcp.1
+
|transcript_name=ENST00000468556.1
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_109290.1
 
|tss_id=hg_109290.1

Revision as of 19:43, 15 June 2021

Basic information about the TSS


TSS ID:hg_109290.1
Species:human
Chr:chr10
TSS Classification:yes
Start:48251669
End:48251681
Strand:-
TSS Score:1
Start of the center position in the TSS region:48251675
End of the center position in the TSS region:48251676



Gene and protein annotation


Transcript_name:ENST00000468556.1
Distance:17
GeneID:143162
HGNC/MGI_ID:HGNC:28572
UniProt_ID:
Gene_name:FERM and PDZ domain containing 2
Gene_symbol:FRMPD2
Gene_synonyms:MGC35285
Gene_source:HGNC:28572



Transcript annotation


Transcript_name:ENST00000468556.1
Distance:17
Num_trans:5
All_trans:ENST00000468556.1:17 ENST00000492045.1:59 ENST00000305531.3:-76 NM_001318191:-76 AK123038:-76



TATA-Box annotation


Distance to TSS:82
Nearest PromoterID:NM_001318191
Entrez ID:143162
Nearest Unigene:Hs.664786
Nearest Refseq:NM_152428
Nearest Ensembl:ENSG00000170324
Gene Name:FERM and PDZ domain containing 2
Gene Alias:PDZD5C|PDZK4|PDZK5C
Gene Description:FERM and PDZ domain containing 2
Gene Type:protein-coding
CpG%:0.03
GC%:0.597015
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):