Difference between revisions of "TSS:Hg 109297.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PDZK4= | |PDZK4= | ||
|PDZK5C= | |PDZK5C= | ||
| − | |all_trans= | + | |all_trans=CR749241:0 ENST00000374201.8:169 NM_001018071:169 ENST00000637395.1:176 AK303923:188 ENST00000486151.5:191 AK131386:191 ENST00000636244.1:298 BC156408:300 BC157131:300 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-176 |
|end=48274880 | |end=48274880 | ||
|end_of_center_position=48274873 | |end_of_center_position=48274873 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=PDZD5C | + | |gene_alias=PDZD5C{{!}}PDZK4{{!}}PDZK5C |
|gene_description=FERM and PDZ domain containing 2 | |gene_description=FERM and PDZ domain containing 2 | ||
|gene_id=143162 | |gene_id=143162 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=48274872 | |start_of_center_position=48274872 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=CR749241 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109297.1 | |tss_id=hg_109297.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 19:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48274872 |
|---|---|
| End of the center position in the TSS region: | 48274873 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CR749241 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | CR749241:0 ENST00000374201.8:169 NM_001018071:169 ENST00000637395.1:176 AK303923:188 ENST00000486151.5:191 AK131386:191 ENST00000636244.1:298 BC156408:300 BC157131:300 |
TATA-Box annotation
| Distance to TSS: | -176 |
|---|---|
| Nearest PromoterID: | NM_001018071 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | FERM and PDZ domain containing 2 |
| Gene Alias: | PDZD5C|PDZK4|PDZK5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
