Difference between revisions of "TSS:Hg 109655.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMT4E= | |CMT4E= | ||
|KROX20= | |KROX20= | ||
| − | |all_trans=ENST00000242480. | + | |all_trans=ENST00000242480.4:0 ENST00000637191.1:0 NM_001136179:0 NM_000399:0 NM_001321037:0 NM_001136177:0 BC035625:0 CR749641:0 LF213970:0 MA449547:0 ENST00000411732.3:31 AK091399:31 ENST00000639815.1:71 LF213188:84 MA448765:84 AF139463:184 J04076:264 KJ901404:317 KR710863:317 KR710864:317 KR710865:317 AB464513:317 KU178040:317 KU178041:317 CU690136:319 LF212340:-479 MA447917:-479 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7 |
|end=62816373 | |end=62816373 | ||
|end_of_center_position=62816360 | |end_of_center_position=62816360 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=AT591 | + | |gene_alias=AT591{{!}}CHN1{{!}}CMT1D{{!}}CMT4E{{!}}KROX20 |
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
|gene_id=1959 | |gene_id=1959 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:3239 | |hgnc_mgi_id=HGNC:3239 | ||
|nearest_ensembl=ENSG00000122877 | |nearest_ensembl=ENSG00000122877 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000399 |
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=62816345 | |start=62816345 | ||
|start_of_center_position=62816359 | |start_of_center_position=62816359 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00) |
| − | |transcript_name=ENST00000242480. | + | |transcript_name=ENST00000242480.4 ENST00000637191.1 NM_001136179 NM_000399 NM_001321037 NM_001136177 BC035625 CR749641 LF213970 MA449547 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109655.1 | |tss_id=hg_109655.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P11161 | + | |uniprot_id=A0A1B0GUL0 P11161 |
}} | }} | ||
Revision as of 19:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62816359 |
|---|---|
| End of the center position in the TSS region: | 62816360 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000242480.4 ENST00000637191.1 NM_001136179 NM_000399 NM_001321037 NM_001136177 BC035625 CR749641 LF213970 MA449547 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000242480.4:0 ENST00000637191.1:0 NM_001136179:0 NM_000399:0 NM_001321037:0 NM_001136177:0 BC035625:0 CR749641:0 LF213970:0 MA449547:0 ENST00000411732.3:31 AK091399:31 ENST00000639815.1:71 LF213188:84 MA448765:84 AF139463:184 J04076:264 KJ901404:317 KR710863:317 KR710864:317 KR710865:317 AB464513:317 KU178040:317 KU178041:317 CU690136:319 LF212340:-479 MA447917:-479 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_000399 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | early growth response 2 |
| Gene Alias: | AT591|CHN1|CMT1D|CMT4E|KROX20 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(GTCCATATATGG,-,0.00),-78(CCATATATGGGC,+,0.00),-40(GCCCATAAATAC,-,0.00) |
