Difference between revisions of "TSS:Hg 110127.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AL133610:-224 AK001565:481 | + | |all_trans=LF333246:-42 MA568823:-42 LF333247:-140 MA568824:-140 LF333245:152 MA568822:152 AL133610:-224 LF333248:-458 MA568825:-458 AK001565:481 LF209954:-496 MA445531:-496 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance=- | + | |distance=-42 |
| − | |distance_to_tss= | + | |distance_to_tss=27461 |
|end=74123373 | |end=74123373 | ||
|end_of_center_position=74123367 | |end_of_center_position=74123367 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=adaptor related protein complex 3 mu 1 | + | |gene_description=adaptor related protein complex 3 subunit mu 1 |
|gene_id=26985 | |gene_id=26985 | ||
| − | |gene_name= | + | |gene_name=AP3M1 |
|gene_source=HGNC:569 | |gene_source=HGNC:569 | ||
|gene_symbol=AP3M1 | |gene_symbol=AP3M1 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_012095 | |nearest_refseq=NM_012095 | ||
|nearest_unigene=Hs.500104 | |nearest_unigene=Hs.500104 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=74123360 | |start=74123360 | ||
|start_of_center_position=74123366 | |start_of_center_position=74123366 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF333246 MA568823 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_110127.1 | |tss_id=hg_110127.1 | ||
Latest revision as of 20:03, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74123366 |
|---|---|
| End of the center position in the TSS region: | 74123367 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF333246 MA568823 |
|---|---|
| Distance: | -42 |
| Num_trans: | 12 |
| All_trans: | LF333246:-42 MA568823:-42 LF333247:-140 MA568824:-140 LF333245:152 MA568822:152 AL133610:-224 LF333248:-458 MA568825:-458 AK001565:481 LF209954:-496 MA445531:-496 |
TATA-Box annotation
| Distance to TSS: | 27461 |
|---|---|
| Nearest PromoterID: | NM_001320264 |
| Entrez ID: | 26985 |
| Nearest Unigene: | Hs.500104 |
| Nearest Refseq: | NM_012095 |
| Nearest Ensembl: | ENSG00000185009 |
| Gene Name: | AP3M1 |
| Gene Alias: | - |
| Gene Description: | adaptor related protein complex 3 subunit mu 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
