Difference between revisions of "TSS:Hg 111672.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P167= | |P167= | ||
|TIF32= | |TIF32= | ||
| − | |all_trans=ENST00000369144. | + | |all_trans=ENST00000369144.8:0 ENST00000541549.2:0 NM_003750:0 LP895213:0 D50929:0 JX312508:0 AK309542:0 AK307610:0 BC064926:0 BC107776:0 U78311:9 BC033769:14 BC054342:17 U58046:24 BC114429:68 LF346032:120 MA581609:120 AB383762:122 AK302575:279 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5 |
|eIF3-p170= | |eIF3-p170= | ||
|eIF3-theta= | |eIF3-theta= | ||
| Line 14: | Line 14: | ||
|entrez_id=8661 | |entrez_id=8661 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=EIF3 | + | |gene_alias=EIF3{{!}}EIF3S10{{!}}P167{{!}}TIF32{{!}}eIF3-p170{{!}}eIF3-theta{{!}}p180{{!}}p185 |
|gene_description=eukaryotic translation initiation factor 3 subunit A | |gene_description=eukaryotic translation initiation factor 3 subunit A | ||
|gene_id=8661 | |gene_id=8661 | ||
| − | |gene_name=eukaryotic translation initiation factor 3 subunit A | + | |gene_name=eukaryotic translation initiation factor 3 subunit A; eukaryotic translation initiation factor 6 |
| − | |gene_source=HGNC:3271 | + | |gene_source=HGNC:3271 HGNC:6159 |
| − | |gene_symbol=EIF3A | + | |gene_symbol=EIF3A EIF6 |
| − | |gene_synonyms=KIAA0139 TIF32 eIF3-p170 eIF3-theta | + | |gene_synonyms=KIAA0139 TIF32 b(2)gcn eIF3-p170 eIF3-theta p27BBP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC:3271 | + | |hgnc_mgi_id=HGNC:3271 HGNC:6159 |
|nearest_ensembl=ENSG00000107581 | |nearest_ensembl=ENSG00000107581 | ||
|nearest_promoter_id=NM_003750 | |nearest_promoter_id=NM_003750 | ||
|nearest_refseq=NM_003750 | |nearest_refseq=NM_003750 | ||
|nearest_unigene=Hs.523299 | |nearest_unigene=Hs.523299 | ||
| − | |num_trans= | + | |num_trans=19 |
|p180= | |p180= | ||
|p185= | |p185= | ||
| Line 34: | Line 34: | ||
|start_of_center_position=119080811 | |start_of_center_position=119080811 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000369144. | + | |transcript_name=ENST00000369144.8 ENST00000541549.2 NM_003750 LP895213 D50929 JX312508 AK309542 AK307610 BC064926 BC107776 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_111672.1 | |tss_id=hg_111672.1 | ||
Revision as of 20:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119080811 |
|---|---|
| End of the center position in the TSS region: | 119080812 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000369144.8 ENST00000541549.2 NM_003750 LP895213 D50929 JX312508 AK309542 AK307610 BC064926 BC107776 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000369144.8:0 ENST00000541549.2:0 NM_003750:0 LP895213:0 D50929:0 JX312508:0 AK309542:0 AK307610:0 BC064926:0 BC107776:0 U78311:9 BC033769:14 BC054342:17 U58046:24 BC114429:68 LF346032:120 MA581609:120 AB383762:122 AK302575:279 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_003750 |
| Entrez ID: | 8661 |
| Nearest Unigene: | Hs.523299 |
| Nearest Refseq: | NM_003750 |
| Nearest Ensembl: | ENSG00000107581 |
| Gene Name: | eukaryotic translation initiation factor 3 subunit A; eukaryotic translation initiation factor 6 |
| Gene Alias: | EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 |
| Gene Description: | eukaryotic translation initiation factor 3 subunit A |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
