Difference between revisions of "TSS:Hg 111673.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P167= | |P167= | ||
|TIF32= | |TIF32= | ||
| − | |all_trans=ENST00000541549.2:447 | + | |all_trans=ENST00000541549.2:447 JX312508:447 LP895213:448 ENST00000369144.8:453 NM_003750:453 AK309542:455 BC107776:460 BC064926:464 D50929:466 AK307610:470 U78311:481 BC033769:486 BC054342:489 U58046:496 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=447 | |distance=447 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-454 |
|eIF3-p170= | |eIF3-p170= | ||
|eIF3-theta= | |eIF3-theta= | ||
| Line 14: | Line 14: | ||
|entrez_id=8661 | |entrez_id=8661 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=EIF3 | + | |gene_alias=EIF3{{!}}EIF3S10{{!}}P167{{!}}TIF32{{!}}eIF3-p170{{!}}eIF3-theta{{!}}p180{{!}}p185 |
|gene_description=eukaryotic translation initiation factor 3 subunit A | |gene_description=eukaryotic translation initiation factor 3 subunit A | ||
|gene_id=8661 | |gene_id=8661 | ||
| Line 20: | Line 20: | ||
|gene_source=HGNC:3271 | |gene_source=HGNC:3271 | ||
|gene_symbol=EIF3A | |gene_symbol=EIF3A | ||
| − | |gene_synonyms=KIAA0139 TIF32 eIF3-p170 eIF3-theta | + | |gene_synonyms=KIAA0139 TIF32 eIF3-p170 eIF3-theta |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:3271 | |hgnc_mgi_id=HGNC:3271 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_003750 | |nearest_refseq=NM_003750 | ||
|nearest_unigene=Hs.523299 | |nearest_unigene=Hs.523299 | ||
| − | |num_trans= | + | |num_trans=14 |
|p180= | |p180= | ||
|p185= | |p185= | ||
| Line 34: | Line 34: | ||
|start_of_center_position=119081271 | |start_of_center_position=119081271 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000541549.2 | + | |transcript_name=ENST00000541549.2 JX312508 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_111673.1 | |tss_id=hg_111673.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=J9R021 | + | |uniprot_id=J9R021 |
}} | }} | ||
Revision as of 20:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119081271 |
|---|---|
| End of the center position in the TSS region: | 119081272 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000541549.2 JX312508 |
|---|---|
| Distance: | 447 |
| Num_trans: | 14 |
| All_trans: | ENST00000541549.2:447 JX312508:447 LP895213:448 ENST00000369144.8:453 NM_003750:453 AK309542:455 BC107776:460 BC064926:464 D50929:466 AK307610:470 U78311:481 BC033769:486 BC054342:489 U58046:496 |
TATA-Box annotation
| Distance to TSS: | -454 |
|---|---|
| Nearest PromoterID: | NM_003750 |
| Entrez ID: | 8661 |
| Nearest Unigene: | Hs.523299 |
| Nearest Refseq: | NM_003750 |
| Nearest Ensembl: | ENSG00000107581 |
| Gene Name: | eukaryotic translation initiation factor 3 subunit A |
| Gene Alias: | EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 |
| Gene Description: | eukaryotic translation initiation factor 3 subunit A |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
