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Difference between revisions of "TSS:Hg 111740.1"

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Line 11: Line 11:
 
|TK14=
 
|TK14=
 
|TK25=
 
|TK25=
−
|all_trans=ENST00000613048.4:0 ENST00000356226.8:0 ENST00000604236.5:0 ENST00000369059.5:0 ENST00000457416.6:0 ENST00000360144.7:0 NR_073009:0 NM_000141:0 NM_001144918:0 NM_001144917:0 NM_022970:0 NM_001320658:0 NM_001144919:0 uc057wkv.1:0 uc010qtm.3:0 uc057wky.1:0 uc057wkz.1:0 uc057wle.1:0 uc057wlf.1:0 BC039243:0 BC096749:0 M97193:0 AK026508:0 M35718:2 ENST00000336553.10:4 uc057wli.1:4 ENST00000369060.8:102 ENST00000359354.6:102 uc010qtl.3:102 uc057wll.1:102 M87771:102 ENST00000369058.7:166 uc057wlh.1:166 AB030073:166 M80634:166 AB030075:166 AB030074:166 AB030076:166 AB030077:166 AB030078:166 M87772:314 ENST00000358487.9:316 uc057wkw.1:316 M87770:316 ENST00000490349.5:328 uc057wlk.1:328 U11814:328 X52832:410
+
|all_trans=ENST00000358487.10:0 ENST00000613048.4:0 ENST00000356226.8:0 ENST00000604236.5:0 ENST00000369059.5:0 ENST00000457416.6:0 ENST00000360144.7:0 NM_022970:0 NM_000141:0 NM_001144917:0 NR_073009:0 NM_001144918:0 NM_001320658:0 NM_001144919:0 BC039243:0 BC096749:0 M97193:0 AK026508:0 M35718:2 ENST00000336553.10:4 ENST00000369060.8:102 ENST00000359354.6:102 M87771:102 ENST00000369058.7:166 AB030073:166 M80634:166 AB030075:166 AB030074:166 AB030076:166 AB030077:166 AB030078:166 M87772:314 M87770:316 ENST00000490349.5:328 U11814:328 X52832:410 ENST00000636922.1:434
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.185
 
|cpg_percent=0.185
 
|distance=0
 
|distance=0
−
|distance_to_tss=28
+
|distance_to_tss=14
 
|end=121598461
 
|end=121598461
 
|end_of_center_position=121598431
 
|end_of_center_position=121598431
 
|entrez_id=2263
 
|entrez_id=2263
 
|gc_percent=0.810945
 
|gc_percent=0.810945
−
|gene_alias=BBDS
+
|gene_alias=BBDS{{!}}BEK{{!}}BFR-1{{!}}CD332{{!}}CEK3{{!}}CFD1{{!}}ECT1{{!}}JWS{{!}}K-SAM{{!}}KGFR{{!}}TK14{{!}}TK25
 
|gene_description=fibroblast growth factor receptor 2
 
|gene_description=fibroblast growth factor receptor 2
 
|gene_id=2263
 
|gene_id=2263
Line 30: Line 30:
 
|hgnc_mgi_id=HGNC:3689
 
|hgnc_mgi_id=HGNC:3689
 
|nearest_ensembl=ENSG00000066468
 
|nearest_ensembl=ENSG00000066468
−
|nearest_promoter_id=NM_022970
+
|nearest_promoter_id=NR_073009
 
|nearest_refseq=NM_000141
 
|nearest_refseq=NM_000141
 
|nearest_unigene=Hs.533683
 
|nearest_unigene=Hs.533683
−
|num_trans=48
+
|num_trans=37
 
|species=human
 
|species=human
 
|start=121598399
 
|start=121598399
 
|start_of_center_position=121598430
 
|start_of_center_position=121598430
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000613048.4 ENST00000356226.8 ENST00000604236.5 ENST00000369059.5 ENST00000457416.6 ENST00000360144.7 NR_073009 NM_000141 NM_001144918 NM_001144917 NM_022970 NM_001320658 NM_001144919 uc057wkv.1 uc010qtm.3 uc057wky.1 uc057wkz.1 uc057wle.1 uc057wlf.1 BC039243 BC096749 M97193 AK026508
+
|transcript_name=ENST00000358487.10 ENST00000613048.4 ENST00000356226.8 ENST00000604236.5 ENST00000369059.5 ENST00000457416.6 ENST00000360144.7 NM_022970 NM_000141 NM_001144917 NR_073009 NM_001144918 NM_001320658 NM_001144919 BC039243 BC096749 M97193 AK026508
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_111740.1
 
|tss_id=hg_111740.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=D2CGD1 E7EVR7 P21802 S4R3B2
+
|uniprot_id=A0A141AXF1 D2CGD1 E7EVR7 P21802 S4R3B2
 
}}
 
}}

Revision as of 20:40, 15 June 2021

Basic information about the TSS

TSS ID:hg_111740.1
Species:human
Chr:chr10
TSS Classification:yes
Start:121598399
End:121598461
Strand:-
TSS Score:1
Start of the center position in the TSS region:121598430
End of the center position in the TSS region:121598431



Gene and protein annotation

Transcript_name:ENST00000358487.10 ENST00000613048.4 ENST00000356226.8 ENST00000604236.5 ENST00000369059.5 ENST00000457416.6 ENST00000360144.7 NM_022970 NM_000141 NM_001144917 NR_073009 NM_001144918 NM_001320658 NM_001144919 BC039243 BC096749 M97193 AK026508
Distance:0
GeneID:2263
HGNC/MGI_ID:HGNC:3689
UniProt_ID:A0A141AXF1 D2CGD1 E7EVR7 P21802 S4R3B2
Gene_name:fibroblast growth factor receptor 2
Gene_symbol:FGFR2
Gene_synonyms:CD332 CEK3 ECT1 K-SAM TK14 TK25
Gene_source:HGNC:3689



Transcript annotation

Transcript_name:ENST00000358487.10 ENST00000613048.4 ENST00000356226.8 ENST00000604236.5 ENST00000369059.5 ENST00000457416.6 ENST00000360144.7 NM_022970 NM_000141 NM_001144917 NR_073009 NM_001144918 NM_001320658 NM_001144919 BC039243 BC096749 M97193 AK026508
Distance:0
Num_trans:37
All_trans:ENST00000358487.10:0 ENST00000613048.4:0 ENST00000356226.8:0 ENST00000604236.5:0 ENST00000369059.5:0 ENST00000457416.6:0 ENST00000360144.7:0 NM_022970:0 NM_000141:0 NM_001144917:0 NR_073009:0 NM_001144918:0 NM_001320658:0 NM_001144919:0 BC039243:0 BC096749:0 M97193:0 AK026508:0 M35718:2 ENST00000336553.10:4 ENST00000369060.8:102 ENST00000359354.6:102 M87771:102 ENST00000369058.7:166 AB030073:166 M80634:166 AB030075:166 AB030074:166 AB030076:166 AB030077:166 AB030078:166 M87772:314 M87770:316 ENST00000490349.5:328 U11814:328 X52832:410 ENST00000636922.1:434



TATA-Box annotation

Distance to TSS:14
Nearest PromoterID:NR_073009
Entrez ID:2263
Nearest Unigene:Hs.533683
Nearest Refseq:NM_000141
Nearest Ensembl:ENSG00000066468
Gene Name:fibroblast growth factor receptor 2
Gene Alias:BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25
Gene Description:fibroblast growth factor receptor 2
Gene Type:protein-coding
CpG%:0.185
GC%:0.810945
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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