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Difference between revisions of "TSS:Hg 111886.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000411419.6:0 uc001lih.5:0 BC047018:0 NM_001083914:-10 ENST00000530884.1:-16 uc057wqp.1:-16 ENST00000476817.1:-125 uc057wqo.1:-125 NM_001329:486 NM_001290214:486
+
|all_trans=ENST00000411419.6:0 NM_001083914:0 BC047018:0 LF384305:-10 MA619882:-10 ENST00000530884.1:-16 ENST00000476817.1:-125 NM_001290214:457 NM_001329:457
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.075
 
|cpg_percent=0.075
 
|distance=0
 
|distance=0
|distance_to_tss=29
+
|distance_to_tss=-2
 
|end=125161045
 
|end=125161045
 
|end_of_center_position=125161033
 
|end_of_center_position=125161033
Line 22: Line 22:
 
|nearest_refseq=NM_001329
 
|nearest_refseq=NM_001329
 
|nearest_unigene=Hs.501345
 
|nearest_unigene=Hs.501345
|num_trans=10
+
|num_trans=9
 
|species=human
 
|species=human
 
|start=125161019
 
|start=125161019
 
|start_of_center_position=125161032
 
|start_of_center_position=125161032
 
|strand=-
 
|strand=-
|transcript_name=ENST00000411419.6 uc001lih.5 BC047018
+
|transcript_name=ENST00000411419.6 NM_001083914 BC047018
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_111886.1
 
|tss_id=hg_111886.1

Revision as of 20:43, 15 June 2021

Basic information about the TSS


TSS ID:hg_111886.1
Species:human
Chr:chr10
TSS Classification:yes
Start:125161019
End:125161045
Strand:-
TSS Score:1
Start of the center position in the TSS region:125161032
End of the center position in the TSS region:125161033



Gene and protein annotation


Transcript_name:ENST00000411419.6 NM_001083914 BC047018
Distance:0
GeneID:1488
HGNC/MGI_ID:HGNC:2495
UniProt_ID:P56545
Gene_name:C-terminal binding protein 2
Gene_symbol:CTBP2
Gene_synonyms:ribeye
Gene_source:HGNC:2495



Transcript annotation


Transcript_name:ENST00000411419.6 NM_001083914 BC047018
Distance:0
Num_trans:9
All_trans:ENST00000411419.6:0 NM_001083914:0 BC047018:0 LF384305:-10 MA619882:-10 ENST00000530884.1:-16 ENST00000476817.1:-125 NM_001290214:457 NM_001329:457



TATA-Box annotation


Distance to TSS:-2
Nearest PromoterID:NM_001083914
Entrez ID:1488
Nearest Unigene:Hs.501345
Nearest Refseq:NM_001329
Nearest Ensembl:ENSG00000175029
Gene Name:C-terminal binding protein 2
Gene Alias:-
Gene Description:C-terminal binding protein 2
Gene Type:protein-coding
CpG%:0.075
GC%:0.636816
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):