Difference between revisions of "TSS:Hg 111979.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK297577:136 ENST00000488181. | + | |all_trans=NR_146939:-29 NM_001350921:-29 NM_001350922:-29 NM_001350923:-29 AK297577:136 ENST00000488181.2:200 AK309217:225 |
|bA422P15.2= | |bA422P15.2= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-29 |
| − | |distance_to_tss=- | + | |distance_to_tss=-145 |
|end=126670664 | |end=126670664 | ||
|end_of_center_position=126670655 | |end_of_center_position=126670655 | ||
|entrez_id=118611 | |entrez_id=118611 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=FATS | + | |gene_alias=FATS{{!}}bA422P15.2 |
|gene_description=chromosome 10 open reading frame 90 | |gene_description=chromosome 10 open reading frame 90 | ||
|gene_id=118611 | |gene_id=118611 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:26563 | |hgnc_mgi_id=HGNC:26563 | ||
|nearest_ensembl=ENSG00000154493 | |nearest_ensembl=ENSG00000154493 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001350922 |
|nearest_refseq=NM_001004298 | |nearest_refseq=NM_001004298 | ||
|nearest_unigene=Hs.587663 | |nearest_unigene=Hs.587663 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=126670645 | |start=126670645 | ||
|start_of_center_position=126670654 | |start_of_center_position=126670654 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NR_146939 NM_001350921 NM_001350922 NM_001350923 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_111979.1 | |tss_id=hg_111979.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 20:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 126670654 |
|---|---|
| End of the center position in the TSS region: | 126670655 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_146939 NM_001350921 NM_001350922 NM_001350923 |
|---|---|
| Distance: | -29 |
| Num_trans: | 7 |
| All_trans: | NR_146939:-29 NM_001350921:-29 NM_001350922:-29 NM_001350923:-29 AK297577:136 ENST00000488181.2:200 AK309217:225 |
TATA-Box annotation
| Distance to TSS: | -145 |
|---|---|
| Nearest PromoterID: | NM_001350922 |
| Entrez ID: | 118611 |
| Nearest Unigene: | Hs.587663 |
| Nearest Refseq: | NM_001004298 |
| Nearest Ensembl: | ENSG00000154493 |
| Gene Name: | chromosome 10 open reading frame 90 |
| Gene Alias: | FATS|bA422P15.2 |
| Gene Description: | chromosome 10 open reading frame 90 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
