Difference between revisions of "TSS:Hg 112138.1"
From referenceTSS
| Line 3: | Line 3: | ||
|POF12= | |POF12= | ||
|SPGF15= | |SPGF15= | ||
| − | |all_trans=ENST00000479535.2:0 ENST00000303903.10:0 | + | |all_trans=ENST00000479535.2:0 ENST00000303903.10:0 ENST00000343131.7:0 NM_001143764:0 AK314978:0 BC034821:0 GQ901041:0 AK309935:0 NM_001143763:-46 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=133565588 | |end=133565588 | ||
|end_of_center_position=133565580 | |end_of_center_position=133565580 | ||
|entrez_id=93426 | |entrez_id=93426 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=C10orf94 | + | |gene_alias=C10orf94{{!}}CT76{{!}}POF12{{!}}SPGF15 |
|gene_description=synaptonemal complex central element protein 1 | |gene_description=synaptonemal complex central element protein 1 | ||
|gene_id=93426 | |gene_id=93426 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_130784 | |nearest_refseq=NM_130784 | ||
|nearest_unigene=Hs.553795 | |nearest_unigene=Hs.553795 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=133565570 | |start=133565570 | ||
|start_of_center_position=133565579 | |start_of_center_position=133565579 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000479535.2 ENST00000303903.10 | + | |transcript_name=ENST00000479535.2 ENST00000303903.10 ENST00000343131.7 NM_001143764 AK314978 BC034821 GQ901041 AK309935 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112138.1 | |tss_id=hg_112138.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0B4J1R9 | + | |uniprot_id=A0A0B4J1R9 A0A384NQ41 Q8N0S2 |
}} | }} | ||
Revision as of 20:49, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 133565579 |
|---|---|
| End of the center position in the TSS region: | 133565580 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000479535.2 ENST00000303903.10 ENST00000343131.7 NM_001143764 AK314978 BC034821 GQ901041 AK309935 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000479535.2:0 ENST00000303903.10:0 ENST00000343131.7:0 NM_001143764:0 AK314978:0 BC034821:0 GQ901041:0 AK309935:0 NM_001143763:-46 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001143764 |
| Entrez ID: | 93426 |
| Nearest Unigene: | Hs.553795 |
| Nearest Refseq: | NM_130784 |
| Nearest Ensembl: | ENSG00000171772 |
| Gene Name: | synaptonemal complex central element protein 1 |
| Gene Alias: | C10orf94|CT76|POF12|SPGF15 |
| Gene Description: | synaptonemal complex central element protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
