Difference between revisions of "TSS:Hg 112140.1"
From referenceTSS
| Line 3: | Line 3: | ||
|POF12= | |POF12= | ||
|SPGF15= | |SPGF15= | ||
| − | |all_trans= | + | |all_trans=NM_001143763:-19 BC034821:21 GQ901041:21 ENST00000479535.2:22 ENST00000303903.10:22 ENST00000343131.7:22 NM_001143764:22 AK314978:22 AK309935:26 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 12: | Line 12: | ||
|entrez_id=93426 | |entrez_id=93426 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C10orf94 | + | |gene_alias=C10orf94{{!}}CT76{{!}}POF12{{!}}SPGF15 |
|gene_description=synaptonemal complex central element protein 1 | |gene_description=synaptonemal complex central element protein 1 | ||
|gene_id=93426 | |gene_id=93426 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:28852 | |hgnc_mgi_id=HGNC:28852 | ||
|nearest_ensembl=ENSG00000171772 | |nearest_ensembl=ENSG00000171772 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001143763 |
|nearest_refseq=NM_130784 | |nearest_refseq=NM_130784 | ||
|nearest_unigene=Hs.553795 | |nearest_unigene=Hs.553795 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=133565604 | |start=133565604 | ||
|start_of_center_position=133565609 | |start_of_center_position=133565609 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001143763 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112140.1 | |tss_id=hg_112140.1 | ||
Revision as of 20:49, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133565609 |
|---|---|
| End of the center position in the TSS region: | 133565610 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001143763 |
|---|---|
| Distance: | -19 |
| Num_trans: | 9 |
| All_trans: | NM_001143763:-19 BC034821:21 GQ901041:21 ENST00000479535.2:22 ENST00000303903.10:22 ENST00000343131.7:22 NM_001143764:22 AK314978:22 AK309935:26 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001143763 |
| Entrez ID: | 93426 |
| Nearest Unigene: | Hs.553795 |
| Nearest Refseq: | NM_130784 |
| Nearest Ensembl: | ENSG00000171772 |
| Gene Name: | synaptonemal complex central element protein 1 |
| Gene Alias: | C10orf94|CT76|POF12|SPGF15 |
| Gene Description: | synaptonemal complex central element protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
