Difference between revisions of "TSS:Hg 112265.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P2= | |P2= | ||
|RPP2= | |RPP2= | ||
| − | |all_trans= | + | |all_trans=ENST00000532004.5:189 BC005354:189 ENST00000321153.9:191 NM_001004:191 D28411:191 BC005920:191 AK311954:192 AK130959:192 M17887:192 ENST00000530797.5:208 BC062314:211 BC007573:215 AK056066:221 ENST00000524867.1:227 KJ892048:458 CR542248:459 CR542212:459 ENST00000530398.1:493 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=189 |
| − | |distance_to_tss=- | + | |distance_to_tss=-193 |
|end=809776 | |end=809776 | ||
|end_of_center_position=809774 | |end_of_center_position=809774 | ||
|entrez_id=6181 | |entrez_id=6181 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=D11S2243E | + | |gene_alias=D11S2243E{{!}}LP2{{!}}P2{{!}}RPP2 |
|gene_description=ribosomal protein lateral stalk subunit P2 | |gene_description=ribosomal protein lateral stalk subunit P2 | ||
|gene_id=6181 | |gene_id=6181 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_001004 | |nearest_refseq=NM_001004 | ||
|nearest_unigene=Hs.437594 | |nearest_unigene=Hs.437594 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=809771 | |start=809771 | ||
|start_of_center_position=809773 | |start_of_center_position=809773 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-32(CGCTATAAGAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000532004.5 BC005354 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112265.1 | |tss_id=hg_112265.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 20:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 809773 |
|---|---|
| End of the center position in the TSS region: | 809774 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000532004.5 BC005354 |
|---|---|
| Distance: | 189 |
| Num_trans: | 18 |
| All_trans: | ENST00000532004.5:189 BC005354:189 ENST00000321153.9:191 NM_001004:191 D28411:191 BC005920:191 AK311954:192 AK130959:192 M17887:192 ENST00000530797.5:208 BC062314:211 BC007573:215 AK056066:221 ENST00000524867.1:227 KJ892048:458 CR542248:459 CR542212:459 ENST00000530398.1:493 |
TATA-Box annotation
| Distance to TSS: | -193 |
|---|---|
| Nearest PromoterID: | NM_001004 |
| Entrez ID: | 6181 |
| Nearest Unigene: | Hs.437594 |
| Nearest Refseq: | NM_001004 |
| Nearest Ensembl: | ENSG00000177600 |
| Gene Name: | ribosomal protein lateral stalk subunit P2 |
| Gene Alias: | D11S2243E|LP2|P2|RPP2 |
| Gene Description: | ribosomal protein lateral stalk subunit P2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CGCTATAAGAGC,-,0.00) |
