Difference between revisions of "TSS:Hg 112293.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000528315.1:0 ENST00000533803.1:0 ENST00000534191.1:0 | + | |all_trans=ENST00000528315.1:0 ENST00000533803.1:0 ENST00000534191.1:0 AK304093:0 LF207971:-2 MA443548:-2 LF212162:-376 MA447739:-376 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-1761 |
|end=826180 | |end=826180 | ||
|end_of_center_position=826159 | |end_of_center_position=826159 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:28703 | |hgnc_mgi_id=HGNC:28703 | ||
|nearest_ensembl=ENSG00000177685 | |nearest_ensembl=ENSG00000177685 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286606 |
|nearest_refseq=NM_173584 | |nearest_refseq=NM_173584 | ||
|nearest_unigene=Hs.660936 | |nearest_unigene=Hs.660936 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=826136 | |start=826136 | ||
|start_of_center_position=826158 | |start_of_center_position=826158 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=42(TCCTTGAAAAGC,-,0.00) |
| − | |transcript_name=ENST00000528315.1 ENST00000533803.1 ENST00000534191.1 | + | |transcript_name=ENST00000528315.1 ENST00000533803.1 ENST00000534191.1 AK304093 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112293.1 | |tss_id=hg_112293.1 | ||
Revision as of 20:53, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 826158 |
|---|---|
| End of the center position in the TSS region: | 826159 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000528315.1 ENST00000533803.1 ENST00000534191.1 AK304093 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000528315.1:0 ENST00000533803.1:0 ENST00000534191.1:0 AK304093:0 LF207971:-2 MA443548:-2 LF212162:-376 MA447739:-376 |
TATA-Box annotation
| Distance to TSS: | -1761 |
|---|---|
| Nearest PromoterID: | NM_001286606 |
| Entrez ID: | 283229 |
| Nearest Unigene: | Hs.660936 |
| Nearest Refseq: | NM_173584 |
| Nearest Ensembl: | ENSG00000177685 |
| Gene Name: | calcium release activated channel regulator 2B |
| Gene Alias: | EFCAB4A |
| Gene Description: | calcium release activated channel regulator 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 42(TCCTTGAAAAGC,-,0.00) |
