Difference between revisions of "TSS:Hg 112354.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000534584.2:178 | + | |all_trans=ENST00000534584.2:178 NR_160890:178 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=178 | |distance=178 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-184 |
|end=1049702 | |end=1049702 | ||
|end_of_center_position=1049696 | |end_of_center_position=1049696 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2688 |
| − | |gene_name= | + | |gene_id=101927503 |
| − | |gene_type= | + | |gene_name=long intergenic non-protein coding RNA 2688 |
| + | |gene_source=HGNC:54184 | ||
| + | |gene_symbol=LINC02688 | ||
| + | |gene_synonyms= | ||
| + | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:54184 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_160890 |
|nearest_refseq=NM_001323425 | |nearest_refseq=NM_001323425 | ||
|nearest_unigene=Hs.436626 | |nearest_unigene=Hs.436626 | ||
| Line 22: | Line 27: | ||
|start_of_center_position=1049695 | |start_of_center_position=1049695 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000534584.2 | + | |transcript_name=ENST00000534584.2 NR_160890 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_112354.1 | |tss_id=hg_112354.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1049695 |
|---|---|
| End of the center position in the TSS region: | 1049696 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000534584.2 NR_160890 |
|---|---|
| Distance: | 178 |
| Num_trans: | 2 |
| All_trans: | ENST00000534584.2:178 NR_160890:178 |
TATA-Box annotation
| Distance to TSS: | -184 |
|---|---|
| Nearest PromoterID: | NR_160890 |
| Entrez ID: | 101927503 |
| Nearest Unigene: | Hs.436626 |
| Nearest Refseq: | NM_001323425 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 2688 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2688 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
