Difference between revisions of "TSS:Hg 112906.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK308398:0 AK001131:0 BC021714:-146 | + | |all_trans=ENST00000299492.9:0 NR_147792:0 NM_003621:0 NM_001351862:0 NM_001351856:0 NM_001351854:0 NM_001351853:0 NM_001351855:0 AK308398:0 AK001131:0 BC021714:-146 ENST00000528947.5:-200 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-5 |
|end=7514020 | |end=7514020 | ||
|end_of_center_position=7513994 | |end_of_center_position=7513994 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_003621 | |nearest_refseq=NM_003621 | ||
|nearest_unigene=Hs.655714 | |nearest_unigene=Hs.655714 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=7513967 | |start=7513967 | ||
|start_of_center_position=7513993 | |start_of_center_position=7513993 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK308398 AK001131 | + | |transcript_name=ENST00000299492.9 NR_147792 NM_003621 NM_001351862 NM_001351856 NM_001351854 NM_001351853 NM_001351855 AK308398 AK001131 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_112906.1 | |tss_id=hg_112906.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B3KM46 | + | |uniprot_id=B3KM46 Q8ND30 |
}} | }} | ||
Revision as of 21:07, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7513993 |
|---|---|
| End of the center position in the TSS region: | 7513994 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000299492.9 NR_147792 NM_003621 NM_001351862 NM_001351856 NM_001351854 NM_001351853 NM_001351855 AK308398 AK001131 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000299492.9:0 NR_147792:0 NM_003621:0 NM_001351862:0 NM_001351856:0 NM_001351854:0 NM_001351853:0 NM_001351855:0 AK308398:0 AK001131:0 BC021714:-146 ENST00000528947.5:-200 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_003621 |
| Entrez ID: | 8495 |
| Nearest Unigene: | Hs.655714 |
| Nearest Refseq: | NM_003621 |
| Nearest Ensembl: | ENSG00000166387 |
| Gene Name: | PPFIA binding protein 2 |
| Gene Alias: | Cclp1 |
| Gene Description: | PPFIA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
