Difference between revisions of "TSS:Hg 114450.1"
From referenceTSS
| Line 5: | Line 5: | ||
|MS4A4= | |MS4A4= | ||
|MS4A7= | |MS4A7= | ||
| − | |all_trans=ENST00000532114. | + | |all_trans=ENST00000532114.6:0 ENST00000529991.2:16 ENST00000679988.1:33 AK292089:42 ENST00000343968.8:112 AK075081:112 ENST00000529950.2:122 ENST00000681157.1:122 ENST00000337908.5:122 NM_148975:122 NM_001243266:122 NM_024021:122 BC020648:122 ENST00000527056.5:125 CU676600:130 KJ893892:130 DQ891395:131 DQ894573:131 AB022821:132 AK314033:154 AB013102:157 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-128 |
|end=60280544 | |end=60280544 | ||
|end_of_center_position=60280538 | |end_of_center_position=60280538 | ||
|entrez_id=51338 | |entrez_id=51338 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=4SPAN1 | + | |gene_alias=4SPAN1{{!}}CD20-L1{{!}}CD20L1{{!}}HDCME31P{{!}}MS4A4{{!}}MS4A7 |
|gene_description=membrane spanning 4-domains A4A | |gene_description=membrane spanning 4-domains A4A | ||
|gene_id=51338 | |gene_id=51338 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:13371 | |hgnc_mgi_id=HGNC:13371 | ||
|nearest_ensembl=ENSG00000110079 | |nearest_ensembl=ENSG00000110079 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001243266 |
|nearest_refseq=NM_024021 | |nearest_refseq=NM_024021 | ||
|nearest_unigene=Hs.325960 | |nearest_unigene=Hs.325960 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=60280531 | |start=60280531 | ||
|start_of_center_position=60280537 | |start_of_center_position=60280537 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-32(CGATATAAAAGA,-,0.00) |
| − | |transcript_name=ENST00000532114. | + | |transcript_name=ENST00000532114.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_114450.1 | |tss_id=hg_114450.1 | ||
Revision as of 21:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 60280537 |
|---|---|
| End of the center position in the TSS region: | 60280538 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000532114.6 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000532114.6:0 ENST00000529991.2:16 ENST00000679988.1:33 AK292089:42 ENST00000343968.8:112 AK075081:112 ENST00000529950.2:122 ENST00000681157.1:122 ENST00000337908.5:122 NM_148975:122 NM_001243266:122 NM_024021:122 BC020648:122 ENST00000527056.5:125 CU676600:130 KJ893892:130 DQ891395:131 DQ894573:131 AB022821:132 AK314033:154 AB013102:157 |
TATA-Box annotation
| Distance to TSS: | -128 |
|---|---|
| Nearest PromoterID: | NM_001243266 |
| Entrez ID: | 51338 |
| Nearest Unigene: | Hs.325960 |
| Nearest Refseq: | NM_024021 |
| Nearest Ensembl: | ENSG00000110079 |
| Gene Name: | membrane spanning 4-domains A4A |
| Gene Alias: | 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 |
| Gene Description: | membrane spanning 4-domains A4A |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CGATATAAAAGA,-,0.00) |
