Difference between revisions of "TSS:Hg 118104.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF370709:-80 MA606286:-80 LG052084:118 LY496531:118 LY497206:118 LY497818:118 LZ238758:118 MS884393:118 MS994539:118 MS996884:118 MA806128:118 MA822797:118 LY616522:118 MB407223:118 LF160208:127 LP727120:127 LP819390:127 LP939332:127 LQ072820:127 LQ441143:127 LQ673013:127 LY405561:127 LY496320:127 LY496766:127 LY497013:127 LY497420:127 LY497638:127 LY498022:127 LZ234253:127 LZ238499:127 LZ239038:127 MA260800:127 MA405867:127 MA646321:127 MA734205:127 MS833934:127 MS884200:127 MS884607:127 MS902101:127 MS994328:127 MS994774:127 MS996704:127 MS997088:127 MA803374:127 MA805853:127 MA806405:127 MA822458:127 LY616263:127 LY616802:127 BC006831:-152 MB407720:162 AB372813:162 LF160018:162 LP726824:162 LP819094:162 LP939036:162 LQ072819:162 LQ441148:162 LX280753:162 LY405562:162 LZ234371:162 MA260801:162 MA646320:162 MA734204:162 MS833933:162 MS834818:162 MA803373:162 MB406830:162 LF370708:174 MA606285:174 BC007513:-192 LF370711:-196 MA606288:-196 BC053637:-206 ENST00000417089.6:209 BC023213:-234 BC013067:244 ENST00000411861.5:-264 BC063626:-264 BC098439:-282 BC063564:-284 LF370712:-293 MA606289:-293 LC106311:301 BC069247:-310 AK123560:348 BC009853:356 LF370707:357 MA606284:357 LF370714:-362 MA606291:-362 ENST00000436715.5:378 BC015952:-404 ENST00000447298.2:482 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance=- | + | |distance=-80 |
|distance_to_tss=-120 | |distance_to_tss=-120 | ||
|end=1996953 | |end=1996953 | ||
| Line 9: | Line 9: | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=MIRN675 | + | |gene_alias=MIRN675{{!}}hsa-mir-675 |
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=MIR675 |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|hsa-mir-675= | |hsa-mir-675= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284010 |
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=94 |
|species=human | |species=human | ||
|start=1996948 | |start=1996948 | ||
|start_of_center_position=1996950 | |start_of_center_position=1996950 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF370709 MA606286 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118104.1 | |tss_id=hg_118104.1 | ||
Latest revision as of 23:07, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1996950 |
|---|---|
| End of the center position in the TSS region: | 1996951 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370709 MA606286 |
|---|---|
| Distance: | -80 |
| Num_trans: | 94 |
| All_trans: | LF370709:-80 MA606286:-80 LG052084:118 LY496531:118 LY497206:118 LY497818:118 LZ238758:118 MS884393:118 MS994539:118 MS996884:118 MA806128:118 MA822797:118 LY616522:118 MB407223:118 LF160208:127 LP727120:127 LP819390:127 LP939332:127 LQ072820:127 LQ441143:127 LQ673013:127 LY405561:127 LY496320:127 LY496766:127 LY497013:127 LY497420:127 LY497638:127 LY498022:127 LZ234253:127 LZ238499:127 LZ239038:127 MA260800:127 MA405867:127 MA646321:127 MA734205:127 MS833934:127 MS884200:127 MS884607:127 MS902101:127 MS994328:127 MS994774:127 MS996704:127 MS997088:127 MA803374:127 MA805853:127 MA806405:127 MA822458:127 LY616263:127 LY616802:127 BC006831:-152 MB407720:162 AB372813:162 LF160018:162 LP726824:162 LP819094:162 LP939036:162 LQ072819:162 LQ441148:162 LX280753:162 LY405562:162 LZ234371:162 MA260801:162 MA646320:162 MA734204:162 MS833933:162 MS834818:162 MA803373:162 MB406830:162 LF370708:174 MA606285:174 BC007513:-192 LF370711:-196 MA606288:-196 BC053637:-206 ENST00000417089.6:209 BC023213:-234 BC013067:244 ENST00000411861.5:-264 BC063626:-264 BC098439:-282 BC063564:-284 LF370712:-293 MA606289:-293 LC106311:301 BC069247:-310 AK123560:348 BC009853:356 LF370707:357 MA606284:357 LF370714:-362 MA606291:-362 ENST00000436715.5:378 BC015952:-404 ENST00000447298.2:482 |
TATA-Box annotation
| Distance to TSS: | -120 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000284010 |
| Gene Name: | MIR675 |
| Gene Alias: | MIRN675|hsa-mir-675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.08 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
