Difference between revisions of "TSS:Hg 118108.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC053637:1 BC007513:15 BC023213:-21 ENST00000411861.5 | + | |all_trans=BC053637:1 LF370711:11 MA606288:11 BC007513:15 BC023213:-21 ENST00000411861.5:-51 BC063626:-51 BC006831:55 BC098439:-69 BC063564:-71 LF370712:-80 MA606289:-80 BC069247:-97 LF370709:127 MA606286:127 LF370714:-149 MA606291:-149 BC015952:-191 ENST00000439725.5:-294 LF370715:-303 MA606292:-303 BC053636:-308 BC110657:-308 LG052084:329 LY496531:329 LY497206:329 LY497818:329 LZ238758:329 MS884393:329 MS994539:329 MS996884:329 MA806128:329 MA822797:329 LY616522:329 MB407223:329 BC115700:-337 LF160208:338 LP727120:338 LP819390:338 LP939332:338 LQ072820:338 LQ441143:338 LQ673013:338 LY405561:338 LY496320:338 LY496766:338 LY497013:338 LY497420:338 LY497638:338 LY498022:338 LZ234253:338 LZ238499:338 LZ239038:338 MA260800:338 MA405867:338 MA646321:338 MA734205:338 MS833934:338 MS884200:338 MS884607:338 MS902101:338 MS994328:338 MS994774:338 MS996704:338 MS997088:338 MA803374:338 MA805853:338 MA806405:338 MA822458:338 LY616263:338 LY616802:338 MB407720:373 AB372813:373 LF160018:373 LP726824:373 LP819094:373 LP939036:373 LQ072819:373 LQ441148:373 LX280753:373 LY405562:373 LZ234371:373 MA260801:373 MA646320:373 MA734204:373 MS833933:373 MS834818:373 MA803373:373 MB406830:373 LF370708:385 MA606285:385 ENST00000417089.6:420 LF370717:-423 MA606294:-423 BC013067:455 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 9: | Line 9: | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=MIRN675 | + | |gene_alias=MIRN675{{!}}hsa-mir-675 |
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=H19 imprinted maternally expressed transcript |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| − | |gene_synonyms=ASM ASM1 D11S813E LINC00008 NCRNA00008 | + | |gene_synonyms=ASM ASM1 D11S813E LINC00008 MIR675HG NCRNA00008 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|hsa-mir-675= | |hsa-mir-675= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284010 |
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=95 |
|species=human | |species=human | ||
|start=1997159 | |start=1997159 | ||
Revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997162 |
|---|---|
| End of the center position in the TSS region: | 1997163 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC053637 |
|---|---|
| Distance: | 1 |
| Num_trans: | 95 |
| All_trans: | BC053637:1 LF370711:11 MA606288:11 BC007513:15 BC023213:-21 ENST00000411861.5:-51 BC063626:-51 BC006831:55 BC098439:-69 BC063564:-71 LF370712:-80 MA606289:-80 BC069247:-97 LF370709:127 MA606286:127 LF370714:-149 MA606291:-149 BC015952:-191 ENST00000439725.5:-294 LF370715:-303 MA606292:-303 BC053636:-308 BC110657:-308 LG052084:329 LY496531:329 LY497206:329 LY497818:329 LZ238758:329 MS884393:329 MS994539:329 MS996884:329 MA806128:329 MA822797:329 LY616522:329 MB407223:329 BC115700:-337 LF160208:338 LP727120:338 LP819390:338 LP939332:338 LQ072820:338 LQ441143:338 LQ673013:338 LY405561:338 LY496320:338 LY496766:338 LY497013:338 LY497420:338 LY497638:338 LY498022:338 LZ234253:338 LZ238499:338 LZ239038:338 MA260800:338 MA405867:338 MA646321:338 MA734205:338 MS833934:338 MS884200:338 MS884607:338 MS902101:338 MS994328:338 MS994774:338 MS996704:338 MS997088:338 MA803374:338 MA805853:338 MA806405:338 MA822458:338 LY616263:338 LY616802:338 MB407720:373 AB372813:373 LF160018:373 LP726824:373 LP819094:373 LP939036:373 LQ072819:373 LQ441148:373 LX280753:373 LY405562:373 LZ234371:373 MA260801:373 MA646320:373 MA734204:373 MS833933:373 MS834818:373 MA803373:373 MB406830:373 LF370708:385 MA606285:385 ENST00000417089.6:420 LF370717:-423 MA606294:-423 BC013067:455 |
TATA-Box annotation
| Distance to TSS: | -332 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000284010 |
| Gene Name: | H19 imprinted maternally expressed transcript |
| Gene Alias: | MIRN675|hsa-mir-675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
