Difference between revisions of "TSS:Hg 118111.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC063564:1 BC098439:3 BC069247:-16 ENST00000411861.5 | + | |all_trans=LF370712:0 MA606289:0 BC063564:1 BC098439:3 BC069247:-16 ENST00000411861.5:21 BC063626:21 BC023213:51 LF370714:-68 MA606291:-68 BC053637:79 LF370711:89 MA606288:89 BC007513:93 BC015952:-110 BC006831:133 LF370709:205 MA606286:205 ENST00000439725.5:-213 LF370715:-222 MA606292:-222 BC053636:-227 BC110657:-227 BC115700:-256 LF370717:-342 MA606294:-342 LG052084:407 LY496531:407 LY497206:407 LY497818:407 LZ238758:407 MS884393:407 MS994539:407 MS996884:407 MA806128:407 MA822797:407 LY616522:407 MB407223:407 LF160208:416 LP727120:416 LP819390:416 LP939332:416 LQ072820:416 LQ441143:416 LQ673013:416 LY405561:416 LY496320:416 LY496766:416 LY497013:416 LY497420:416 LY497638:416 LY498022:416 LZ234253:416 LZ238499:416 LZ239038:416 MA260800:416 MA405867:416 MA646321:416 MA734205:416 MS833934:416 MS884200:416 MS884607:416 MS902101:416 MS994328:416 MS994774:416 MS996704:416 MS997088:416 MA803374:416 MA805853:416 MA806405:416 MA822458:416 LY616263:416 LY616802:416 MB407720:451 AB372813:451 LF160018:451 LP726824:451 LP819094:451 LP939036:451 LQ072819:451 LQ441148:451 LX280753:451 LY405562:451 LZ234371:451 MA260801:451 MA646320:451 MA734204:451 MS833933:451 MS834818:451 MA803373:451 MB406830:451 LF370708:463 MA606285:463 LF370719:-480 MA606296:-480 ENST00000417089.6:498 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-411 | |distance_to_tss=-411 | ||
|end=1997247 | |end=1997247 | ||
| Line 9: | Line 9: | ||
|entrez_id=100033819 | |entrez_id=100033819 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=MIRN675 | + | |gene_alias=MIRN675{{!}}hsa-mir-675 |
|gene_description=microRNA 675 | |gene_description=microRNA 675 | ||
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=MIR675 |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|hsa-mir-675= | |hsa-mir-675= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284010 |
|nearest_promoter_id=NR_030533 | |nearest_promoter_id=NR_030533 | ||
|nearest_refseq=NR_030533 | |nearest_refseq=NR_030533 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=96 |
|species=human | |species=human | ||
|start=1997237 | |start=1997237 | ||
|start_of_center_position=1997242 | |start_of_center_position=1997242 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF370712 MA606289 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118111.1 | |tss_id=hg_118111.1 | ||
Latest revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997242 |
|---|---|
| End of the center position in the TSS region: | 1997243 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370712 MA606289 |
|---|---|
| Distance: | 0 |
| Num_trans: | 96 |
| All_trans: | LF370712:0 MA606289:0 BC063564:1 BC098439:3 BC069247:-16 ENST00000411861.5:21 BC063626:21 BC023213:51 LF370714:-68 MA606291:-68 BC053637:79 LF370711:89 MA606288:89 BC007513:93 BC015952:-110 BC006831:133 LF370709:205 MA606286:205 ENST00000439725.5:-213 LF370715:-222 MA606292:-222 BC053636:-227 BC110657:-227 BC115700:-256 LF370717:-342 MA606294:-342 LG052084:407 LY496531:407 LY497206:407 LY497818:407 LZ238758:407 MS884393:407 MS994539:407 MS996884:407 MA806128:407 MA822797:407 LY616522:407 MB407223:407 LF160208:416 LP727120:416 LP819390:416 LP939332:416 LQ072820:416 LQ441143:416 LQ673013:416 LY405561:416 LY496320:416 LY496766:416 LY497013:416 LY497420:416 LY497638:416 LY498022:416 LZ234253:416 LZ238499:416 LZ239038:416 MA260800:416 MA405867:416 MA646321:416 MA734205:416 MS833934:416 MS884200:416 MS884607:416 MS902101:416 MS994328:416 MS994774:416 MS996704:416 MS997088:416 MA803374:416 MA805853:416 MA806405:416 MA822458:416 LY616263:416 LY616802:416 MB407720:451 AB372813:451 LF160018:451 LP726824:451 LP819094:451 LP939036:451 LQ072819:451 LQ441148:451 LX280753:451 LY405562:451 LZ234371:451 MA260801:451 MA646320:451 MA734204:451 MS833933:451 MS834818:451 MA803373:451 MB406830:451 LF370708:463 MA606285:463 LF370719:-480 MA606296:-480 ENST00000417089.6:498 |
TATA-Box annotation
| Distance to TSS: | -411 |
|---|---|
| Nearest PromoterID: | NR_030533 |
| Entrez ID: | 100033819 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030533 |
| Nearest Ensembl: | ENSG00000284010 |
| Gene Name: | MIR675 |
| Gene Alias: | MIRN675|hsa-mir-675 |
| Gene Description: | microRNA 675 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
