Difference between revisions of "TSS:Hg 118114.1"
From referenceTSS
| Line 6: | Line 6: | ||
|NCRNA00008= | |NCRNA00008= | ||
|WT2= | |WT2= | ||
| − | |all_trans=BC115700:41 BC053636:70 BC110657:70 ENST00000439725.5:84 | + | |all_trans=LF370717:-34 MA606294:-34 BC115700:41 BC053636:70 BC110657:70 LF370715:75 MA606292:75 ENST00000439725.5:84 LF370719:-172 MA606296:-172 BC015952:187 BC040852:-206 BC040073:-223 LF370714:229 MA606291:229 ENST00000412788.5:-259 BC069247:281 AK056774:-287 AK092486:-287 AK311497:-287 AK309887:-287 LF207984:-290 MA443561:-290 LF370712:298 MA606289:298 BC063564:307 BC098439:309 ENST00000414790.6:-320 ENST00000643292.1:-320 NR_002196:-320 NR_131223:-320 ENST00000411861.5:327 BC063626:327 BC023213:357 BC053637:385 LF370711:395 MA606288:395 BC007513:399 BC006831:439 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-34 |
|distance_to_tss=326 | |distance_to_tss=326 | ||
|end=1997555 | |end=1997555 | ||
| Line 15: | Line 15: | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=ASM | + | |gene_alias=ASM{{!}}ASM1{{!}}BWS{{!}}D11S813E{{!}}LINC00008{{!}}MIR675HG{{!}}NCRNA00008{{!}}WT2 |
| − | |gene_description= | + | |gene_description=H19 imprinted maternally expressed transcript |
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=H19 |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_131223 |
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| − | |num_trans= | + | |num_trans=39 |
|species=human | |species=human | ||
|start=1997543 | |start=1997543 | ||
|start_of_center_position=1997549 | |start_of_center_position=1997549 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF370717 MA606294 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118114.1 | |tss_id=hg_118114.1 | ||
Latest revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997549 |
|---|---|
| End of the center position in the TSS region: | 1997550 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370717 MA606294 |
|---|---|
| Distance: | -34 |
| Num_trans: | 39 |
| All_trans: | LF370717:-34 MA606294:-34 BC115700:41 BC053636:70 BC110657:70 LF370715:75 MA606292:75 ENST00000439725.5:84 LF370719:-172 MA606296:-172 BC015952:187 BC040852:-206 BC040073:-223 LF370714:229 MA606291:229 ENST00000412788.5:-259 BC069247:281 AK056774:-287 AK092486:-287 AK311497:-287 AK309887:-287 LF207984:-290 MA443561:-290 LF370712:298 MA606289:298 BC063564:307 BC098439:309 ENST00000414790.6:-320 ENST00000643292.1:-320 NR_002196:-320 NR_131223:-320 ENST00000411861.5:327 BC063626:327 BC023213:357 BC053637:385 LF370711:395 MA606288:395 BC007513:399 BC006831:439 |
TATA-Box annotation
| Distance to TSS: | 326 |
|---|---|
| Nearest PromoterID: | NR_131223 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | H19 |
| Gene Alias: | ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2 |
| Gene Description: | H19 imprinted maternally expressed transcript |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
