Difference between revisions of "TSS:Hg 118117.1"
From referenceTSS
| Line 6: | Line 6: | ||
|NCRNA00008= | |NCRNA00008= | ||
|WT2= | |WT2= | ||
| − | |all_trans=BC040852:-22 BC040073:-39 | + | |all_trans=LF370719:0 MA606296:0 BC040852:-22 BC040073:-39 ENST00000412788.5:-75 AK056774:-103 AK092486:-103 AK311497:-103 AK309887:-103 LF207984:-106 MA443561:-106 ENST00000414790.6:-136 ENST00000643292.1:-136 NR_002196:-136 NR_131223:-136 LF370717:138 MA606294:138 BC115700:224 BC053636:253 BC110657:253 LF370715:258 MA606292:258 ENST00000439725.5:267 BC015952:370 LF370714:412 MA606291:412 BC069247:464 LF370712:481 MA606289:481 BC063564:490 BC098439:492 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=142 | |distance_to_tss=142 | ||
|end=1997739 | |end=1997739 | ||
| Line 15: | Line 15: | ||
|entrez_id=283120 | |entrez_id=283120 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=ASM | + | |gene_alias=ASM{{!}}ASM1{{!}}BWS{{!}}D11S813E{{!}}LINC00008{{!}}MIR675HG{{!}}NCRNA00008{{!}}WT2 |
| − | |gene_description= | + | |gene_description=H19 imprinted maternally expressed transcript |
|gene_id=283120 | |gene_id=283120 | ||
| − | |gene_name= | + | |gene_name=H19 |
|gene_source=HGNC:4713 | |gene_source=HGNC:4713 | ||
|gene_symbol=H19 | |gene_symbol=H19 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:4713 | |hgnc_mgi_id=HGNC:4713 | ||
|nearest_ensembl=ENSG00000130600 | |nearest_ensembl=ENSG00000130600 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_131223 |
|nearest_refseq=NR_002196 | |nearest_refseq=NR_002196 | ||
|nearest_unigene=Hs.533566 | |nearest_unigene=Hs.533566 | ||
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
|start=1997726 | |start=1997726 | ||
|start_of_center_position=1997732 | |start_of_center_position=1997732 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF370719 MA606296 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118117.1 | |tss_id=hg_118117.1 | ||
Latest revision as of 23:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1997732 |
|---|---|
| End of the center position in the TSS region: | 1997733 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370719 MA606296 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | LF370719:0 MA606296:0 BC040852:-22 BC040073:-39 ENST00000412788.5:-75 AK056774:-103 AK092486:-103 AK311497:-103 AK309887:-103 LF207984:-106 MA443561:-106 ENST00000414790.6:-136 ENST00000643292.1:-136 NR_002196:-136 NR_131223:-136 LF370717:138 MA606294:138 BC115700:224 BC053636:253 BC110657:253 LF370715:258 MA606292:258 ENST00000439725.5:267 BC015952:370 LF370714:412 MA606291:412 BC069247:464 LF370712:481 MA606289:481 BC063564:490 BC098439:492 |
TATA-Box annotation
| Distance to TSS: | 142 |
|---|---|
| Nearest PromoterID: | NR_131223 |
| Entrez ID: | 283120 |
| Nearest Unigene: | Hs.533566 |
| Nearest Refseq: | NR_002196 |
| Nearest Ensembl: | ENSG00000130600 |
| Gene Name: | H19 |
| Gene Alias: | ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2 |
| Gene Description: | H19 imprinted maternally expressed transcript |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
