Difference between revisions of "TSS:Hg 118386.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TRIM5alpha= | |TRIM5alpha= | ||
| − | |all_trans=ENST00000380034. | + | |all_trans=ENST00000380034.8:0 ENST00000396847.7:0 ENST00000419850.1:0 NM_033034:0 NM_033092:0 NM_033093:0 AK027593:0 BX647152:0 BC021258:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=12 |
|end=5685114 | |end=5685114 | ||
|end_of_center_position=5685062 | |end_of_center_position=5685062 | ||
|entrez_id=85363 | |entrez_id=85363 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=RNF88 | + | |gene_alias=RNF88{{!}}TRIM5alpha |
|gene_description=tripartite motif containing 5 | |gene_description=tripartite motif containing 5 | ||
|gene_id=85363 | |gene_id=85363 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_033034 | |nearest_refseq=NM_033034 | ||
|nearest_unigene=Hs.125300 | |nearest_unigene=Hs.125300 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=5685009 | |start=5685009 | ||
|start_of_center_position=5685061 | |start_of_center_position=5685061 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000380034. | + | |transcript_name=ENST00000380034.8 ENST00000396847.7 ENST00000419850.1 NM_033034 NM_033092 NM_033093 AK027593 BX647152 BC021258 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_118386.1 | |tss_id=hg_118386.1 | ||
Revision as of 23:14, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5685061 |
|---|---|
| End of the center position in the TSS region: | 5685062 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000380034.8 ENST00000396847.7 ENST00000419850.1 NM_033034 NM_033092 NM_033093 AK027593 BX647152 BC021258 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000380034.8:0 ENST00000396847.7:0 ENST00000419850.1:0 NM_033034:0 NM_033092:0 NM_033093:0 AK027593:0 BX647152:0 BC021258:0 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_033093 |
| Entrez ID: | 85363 |
| Nearest Unigene: | Hs.125300 |
| Nearest Refseq: | NM_033034 |
| Nearest Ensembl: | ENSG00000132256 |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | RNF88|TRIM5alpha |
| Gene Description: | tripartite motif containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
