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Difference between revisions of "TSS:Hg 118492.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|PRO1385=
 
|PRO1385=
−
|all_trans=ENST00000335425.7:0 ENST00000309737.10:0 ENST00000526962.1:0 ENST00000528463.5:0 ENST00000425599.6:0 ENST00000531450.1:0 ENST00000419822.2:0 NR_045405:0 NM_001206672:0 NM_001206671:0 NM_001135109:0 NM_024557:0 uc001mge.3:0 uc001mgd.3:0 uc057yrg.1:0 uc057yrj.1:0 uc009yfm.3:0 uc057yrk.1:0 uc001mgf.5:0 AL832601:0 BC022455:0 AY326435:0 BX647514:0 AK293933:0 AK296505:0 AM422214:0 AK315379:0 KJ899542:0 KU178773:0 KU178774:0 KU178775:0 AY358475:0 AY326436:0 ENST00000343202.8:-7 uc001mgc.3:-7
+
|all_trans=ENST00000309737.11:0 ENST00000335425.7:0 ENST00000526962.1:0 ENST00000528463.5:0 ENST00000425599.6:0 ENST00000531450.1:0 ENST00000419822.2:0 NR_144485:0 NM_001346693:0 NM_024557:0 NM_001346694:0 NM_001346690:0 NM_001346692:0 NR_144497:0 NM_001206672:0 NM_001206671:0 NM_001135109:0 NR_144484:0 NM_001346691:0 AL832601:0 BC022455:0 AY326435:0 BX647514:0 AK293933:0 AK296505:0 AM422214:0 AK315379:0 KJ899542:0 KU178773:0 KU178774:0 KU178775:0 AY358475:0 AY326436:0 ENST00000343202.8:-7
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.13
 
|cpg_percent=0.13
 
|distance=0
 
|distance=0
−
|distance_to_tss=76
+
|distance_to_tss=7
 
|end=8169048
 
|end=8169048
 
|end_of_center_position=8169018
 
|end_of_center_position=8169018
 
|entrez_id=79608
 
|entrez_id=79608
 
|gc_percent=0.706468
 
|gc_percent=0.706468
−
|gene_alias=AYST720
+
|gene_alias=AYST720{{!}}PRO1385
 
|gene_description=RIC3 acetylcholine receptor chaperone
 
|gene_description=RIC3 acetylcholine receptor chaperone
 
|gene_id=79608
 
|gene_id=79608
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:30338
 
|hgnc_mgi_id=HGNC:30338
 
|nearest_ensembl=ENSG00000166405
 
|nearest_ensembl=ENSG00000166405
−
|nearest_promoter_id=NM_001206671
+
|nearest_promoter_id=NM_001346693
 
|nearest_refseq=NM_024557
 
|nearest_refseq=NM_024557
 
|nearest_unigene=Hs.231850
 
|nearest_unigene=Hs.231850
−
|num_trans=35
+
|num_trans=34
 
|species=human
 
|species=human
 
|start=8168987
 
|start=8168987
 
|start_of_center_position=8169017
 
|start_of_center_position=8169017
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000335425.7 ENST00000309737.10 ENST00000526962.1 ENST00000528463.5 ENST00000425599.6 ENST00000531450.1 ENST00000419822.2 NR_045405 NM_001206672 NM_001206671 NM_001135109 NM_024557 uc001mge.3 uc001mgd.3 uc057yrg.1 uc057yrj.1 uc009yfm.3 uc057yrk.1 uc001mgf.5 AL832601 BC022455 AY326435 BX647514 AK293933 AK296505 AM422214 AK315379 KJ899542 KU178773 KU178774 KU178775 AY358475 AY326436
+
|transcript_name=ENST00000309737.11 ENST00000335425.7 ENST00000526962.1 ENST00000528463.5 ENST00000425599.6 ENST00000531450.1 ENST00000419822.2 NR_144485 NM_001346693 NM_024557 NM_001346694 NM_001346690 NM_001346692 NR_144497 NM_001206672 NM_001206671 NM_001135109 NR_144484 NM_001346691 AL832601 BC022455 AY326435 BX647514 AK293933 AK296505 AM422214 AK315379 KJ899542 KU178773 KU178774 KU178775 AY358475 AY326436
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_118492.1
 
|tss_id=hg_118492.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=A0A0S2Z5U4 A0A0S2Z607 A0A0S2Z6D3 B7Z1U4 B7Z3Z0 E9PK46 E9PKX8 E9PNI0 Q7Z5B4
+
|uniprot_id=A0A0S2Z5U4 A0A0S2Z607 A0A0S2Z6D3 B7Z3Z0 E9PK46 E9PKX8 E9PNI0 Q7Z5B4
 
}}
 
}}

Revision as of 23:16, 15 June 2021

Basic information about the TSS

TSS ID:hg_118492.1
Species:human
Chr:chr11
TSS Classification:yes
Start:8168987
End:8169048
Strand:-
TSS Score:1
Start of the center position in the TSS region:8169017
End of the center position in the TSS region:8169018



Gene and protein annotation

Transcript_name:ENST00000309737.11 ENST00000335425.7 ENST00000526962.1 ENST00000528463.5 ENST00000425599.6 ENST00000531450.1 ENST00000419822.2 NR_144485 NM_001346693 NM_024557 NM_001346694 NM_001346690 NM_001346692 NR_144497 NM_001206672 NM_001206671 NM_001135109 NR_144484 NM_001346691 AL832601 BC022455 AY326435 BX647514 AK293933 AK296505 AM422214 AK315379 KJ899542 KU178773 KU178774 KU178775 AY358475 AY326436
Distance:0
GeneID:79608
HGNC/MGI_ID:HGNC:30338
UniProt_ID:A0A0S2Z5U4 A0A0S2Z607 A0A0S2Z6D3 B7Z3Z0 E9PK46 E9PKX8 E9PNI0 Q7Z5B4
Gene_name:RIC3 acetylcholine receptor chaperone
Gene_symbol:RIC3
Gene_synonyms:AYST720 FLJ11608 PRO1385
Gene_source:HGNC:30338



Transcript annotation

Transcript_name:ENST00000309737.11 ENST00000335425.7 ENST00000526962.1 ENST00000528463.5 ENST00000425599.6 ENST00000531450.1 ENST00000419822.2 NR_144485 NM_001346693 NM_024557 NM_001346694 NM_001346690 NM_001346692 NR_144497 NM_001206672 NM_001206671 NM_001135109 NR_144484 NM_001346691 AL832601 BC022455 AY326435 BX647514 AK293933 AK296505 AM422214 AK315379 KJ899542 KU178773 KU178774 KU178775 AY358475 AY326436
Distance:0
Num_trans:34
All_trans:ENST00000309737.11:0 ENST00000335425.7:0 ENST00000526962.1:0 ENST00000528463.5:0 ENST00000425599.6:0 ENST00000531450.1:0 ENST00000419822.2:0 NR_144485:0 NM_001346693:0 NM_024557:0 NM_001346694:0 NM_001346690:0 NM_001346692:0 NR_144497:0 NM_001206672:0 NM_001206671:0 NM_001135109:0 NR_144484:0 NM_001346691:0 AL832601:0 BC022455:0 AY326435:0 BX647514:0 AK293933:0 AK296505:0 AM422214:0 AK315379:0 KJ899542:0 KU178773:0 KU178774:0 KU178775:0 AY358475:0 AY326436:0 ENST00000343202.8:-7



TATA-Box annotation

Distance to TSS:7
Nearest PromoterID:NM_001346693
Entrez ID:79608
Nearest Unigene:Hs.231850
Nearest Refseq:NM_024557
Nearest Ensembl:ENSG00000166405
Gene Name:RIC3 acetylcholine receptor chaperone
Gene Alias:AYST720|PRO1385
Gene Description:RIC3 acetylcholine receptor chaperone
Gene Type:protein-coding
CpG%:0.13
GC%:0.706468
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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