Difference between revisions of "TSS:Hg 11860.1"
From referenceTSS
| Line 2: | Line 2: | ||
|APP1= | |APP1= | ||
|PABP4= | |PABP4= | ||
| − | |all_trans= | + | |all_trans=BC029969:-41 ENST00000372862.7:89 U33818:355 ENST00000372857.7:-384 U75686:-384 ENST00000372856.7:-391 BC065540:-391 ENST00000676523.1:418 ENST00000678980.1:418 ENST00000677244.1:418 BC071591:-425 ENST00000531243.2:-427 ENST00000677609.1:429 ENST00000372858.8:-430 ENST00000451091.2:-430 NM_001135653:-430 NM_001135654:-430 NM_003819:-430 BC094755:-430 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=-41 | |distance=-41 | ||
| − | |distance_to_tss= | + | |distance_to_tss=439 |
|end=39576360 | |end=39576360 | ||
|end_of_center_position=39576351 | |end_of_center_position=39576351 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| − | |gene_alias=APP-1 | + | |gene_alias=APP-1{{!}}APP1{{!}}PABP4{{!}}iPABP |
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
|gene_id=8761 | |gene_id=8761 | ||
| − | |gene_name= | + | |gene_name=poly(A) binding protein cytoplasmic 4 |
|gene_source=HGNC:8557 | |gene_source=HGNC:8557 | ||
|gene_symbol=PABPC4 | |gene_symbol=PABPC4 | ||
| Line 22: | Line 22: | ||
|iPABP= | |iPABP= | ||
|nearest_ensembl=ENSG00000090621 | |nearest_ensembl=ENSG00000090621 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001135653 |
|nearest_refseq=NM_003819 | |nearest_refseq=NM_003819 | ||
|nearest_unigene=Hs.169900 | |nearest_unigene=Hs.169900 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=39576341 | |start=39576341 | ||
|start_of_center_position=39576350 | |start_of_center_position=39576350 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=BC029969 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_11860.1 | |tss_id=hg_11860.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 23:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 39576350 |
|---|---|
| End of the center position in the TSS region: | 39576351 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC029969 |
|---|---|
| Distance: | -41 |
| Num_trans: | 19 |
| All_trans: | BC029969:-41 ENST00000372862.7:89 U33818:355 ENST00000372857.7:-384 U75686:-384 ENST00000372856.7:-391 BC065540:-391 ENST00000676523.1:418 ENST00000678980.1:418 ENST00000677244.1:418 BC071591:-425 ENST00000531243.2:-427 ENST00000677609.1:429 ENST00000372858.8:-430 ENST00000451091.2:-430 NM_001135653:-430 NM_001135654:-430 NM_003819:-430 BC094755:-430 |
TATA-Box annotation
| Distance to TSS: | 439 |
|---|---|
| Nearest PromoterID: | NM_001135653 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | poly(A) binding protein cytoplasmic 4 |
| Gene Alias: | APP-1|APP1|PABP4|iPABP |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 48(GCCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGA,+,0.00) |
