Difference between revisions of "TSS:Hg 11863.1"
From referenceTSS
| Line 2: | Line 2: | ||
|APP1= | |APP1= | ||
|PABP4= | |PABP4= | ||
| − | |all_trans=ENST00000451091.2:0 ENST00000531243.2:0 | + | |all_trans=ENST00000372858.8:0 ENST00000451091.2:0 ENST00000531243.2:0 NM_001135653:0 NM_001135654:0 NM_003819:0 BC071591:0 BC094755:0 ENST00000372856.7:30 BC065540:30 ENST00000372857.7:37 U75686:37 BC029969:380 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=39576798 | |end=39576798 | ||
|end_of_center_position=39576790 | |end_of_center_position=39576790 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=APP-1 | + | |gene_alias=APP-1{{!}}APP1{{!}}PABP4{{!}}iPABP |
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
|gene_id=8761 | |gene_id=8761 | ||
| − | |gene_name= | + | |gene_name=poly(A) binding protein cytoplasmic 4 |
|gene_source=HGNC:8557 | |gene_source=HGNC:8557 | ||
|gene_symbol=PABPC4 | |gene_symbol=PABPC4 | ||
| Line 22: | Line 22: | ||
|iPABP= | |iPABP= | ||
|nearest_ensembl=ENSG00000090621 | |nearest_ensembl=ENSG00000090621 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001135653 |
|nearest_refseq=NM_003819 | |nearest_refseq=NM_003819 | ||
|nearest_unigene=Hs.169900 | |nearest_unigene=Hs.169900 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=39576780 | |start=39576780 | ||
|start_of_center_position=39576789 | |start_of_center_position=39576789 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(GGGTATAAATGG,-,0.00) |
| − | |transcript_name=ENST00000451091.2 ENST00000531243.2 | + | |transcript_name=ENST00000372858.8 ENST00000451091.2 ENST00000531243.2 NM_001135653 NM_001135654 NM_003819 BC071591 BC094755 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_11863.1 | |tss_id=hg_11863.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B1ANR1 Q6IQ30 | + | |uniprot_id=B1ANR1 Q13310 Q6IQ30 |
}} | }} | ||
Revision as of 23:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 39576789 |
|---|---|
| End of the center position in the TSS region: | 39576790 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372858.8 ENST00000451091.2 ENST00000531243.2 NM_001135653 NM_001135654 NM_003819 BC071591 BC094755 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000372858.8:0 ENST00000451091.2:0 ENST00000531243.2:0 NM_001135653:0 NM_001135654:0 NM_003819:0 BC071591:0 BC094755:0 ENST00000372856.7:30 BC065540:30 ENST00000372857.7:37 U75686:37 BC029969:380 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001135653 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | poly(A) binding protein cytoplasmic 4 |
| Gene Alias: | APP-1|APP1|PABP4|iPABP |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GGGTATAAATGG,-,0.00) |
