Difference between revisions of "TSS:Hg 11867.1"
From referenceTSS
| Line 2: | Line 2: | ||
|APP1= | |APP1= | ||
|PABP4= | |PABP4= | ||
| − | |all_trans= | + | |all_trans=ENST00000372858.8:114 ENST00000451091.2:114 NM_001135653:114 NM_001135654:114 NM_003819:114 BC094755:114 ENST00000531243.2:117 BC071591:119 ENST00000372856.7:153 BC065540:153 ENST00000372857.7:160 U75686:160 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| − | |distance= | + | |distance=114 |
| − | |distance_to_tss=- | + | |distance_to_tss=-117 |
|end=39576910 | |end=39576910 | ||
|end_of_center_position=39576907 | |end_of_center_position=39576907 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=APP-1 | + | |gene_alias=APP-1{{!}}APP1{{!}}PABP4{{!}}iPABP |
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
|gene_id=8761 | |gene_id=8761 | ||
| − | |gene_name= | + | |gene_name=poly(A) binding protein cytoplasmic 4 |
|gene_source=HGNC:8557 | |gene_source=HGNC:8557 | ||
|gene_symbol=PABPC4 | |gene_symbol=PABPC4 | ||
| Line 22: | Line 22: | ||
|iPABP= | |iPABP= | ||
|nearest_ensembl=ENSG00000090621 | |nearest_ensembl=ENSG00000090621 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001135654 |
|nearest_refseq=NM_003819 | |nearest_refseq=NM_003819 | ||
|nearest_unigene=Hs.169900 | |nearest_unigene=Hs.169900 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=39576903 | |start=39576903 | ||
|start_of_center_position=39576906 | |start_of_center_position=39576906 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=84(GGGTATAAATGG,-,0.00) |
| − | |transcript_name=NM_001135654 | + | |transcript_name=ENST00000372858.8 ENST00000451091.2 NM_001135653 NM_001135654 NM_003819 BC094755 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_11867.1 | |tss_id=hg_11867.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q13310 | + | |uniprot_id=B1ANR1 Q13310 |
}} | }} | ||
Revision as of 23:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 39576906 |
|---|---|
| End of the center position in the TSS region: | 39576907 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372858.8 ENST00000451091.2 NM_001135653 NM_001135654 NM_003819 BC094755 |
|---|---|
| Distance: | 114 |
| Num_trans: | 12 |
| All_trans: | ENST00000372858.8:114 ENST00000451091.2:114 NM_001135653:114 NM_001135654:114 NM_003819:114 BC094755:114 ENST00000531243.2:117 BC071591:119 ENST00000372856.7:153 BC065540:153 ENST00000372857.7:160 U75686:160 |
TATA-Box annotation
| Distance to TSS: | -117 |
|---|---|
| Nearest PromoterID: | NM_001135654 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | poly(A) binding protein cytoplasmic 4 |
| Gene Alias: | APP-1|APP1|PABP4|iPABP |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 84(GGGTATAAATGG,-,0.00) |
