Difference between revisions of "TSS:Hg 119525.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|WDR94= | |WDR94= | ||
| − | |all_trans=ENST00000526606.1:115 | + | |all_trans=ENST00000526606.1:115 ENST00000528950.1:195 AK304530:205 NM_001300731:217 NM_001367469:217 NM_001367470:217 NM_001267783:217 NM_001267782:217 NM_001367471:217 ENST00000534300.5:219 AB051523:219 AK000301:221 AK057896:227 LF348016:238 MA583593:238 ENST00000531542.1:242 ENST00000533727.5:292 AL834190:292 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=115 | |distance=115 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-218 |
|end=46594242 | |end=46594242 | ||
|end_of_center_position=46594241 | |end_of_center_position=46594241 | ||
|entrez_id=55626 | |entrez_id=55626 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=DCAF3 | + | |gene_alias=DCAF3{{!}}WDR94 |
|gene_description=autophagy and beclin 1 regulator 1 | |gene_description=autophagy and beclin 1 regulator 1 | ||
|gene_id=55626 | |gene_id=55626 | ||
| − | |gene_name=autophagy | + | |gene_name=autophagy and beclin 1 regulator 1 |
|gene_source=HGNC:25990 | |gene_source=HGNC:25990 | ||
|gene_symbol=AMBRA1 | |gene_symbol=AMBRA1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:25990 | |hgnc_mgi_id=HGNC:25990 | ||
|nearest_ensembl=ENSG00000110497 | |nearest_ensembl=ENSG00000110497 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367471 |
|nearest_refseq=NM_017749 | |nearest_refseq=NM_017749 | ||
|nearest_unigene=Hs.654644 | |nearest_unigene=Hs.654644 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=46594240 | |start_of_center_position=46594240 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000526606 | + | |transcript_name=ENST00000526606.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_119525.1 | |tss_id=hg_119525.1 | ||
Revision as of 23:41, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 46594240 |
|---|---|
| End of the center position in the TSS region: | 46594241 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000526606.1 |
|---|---|
| Distance: | 115 |
| Num_trans: | 18 |
| All_trans: | ENST00000526606.1:115 ENST00000528950.1:195 AK304530:205 NM_001300731:217 NM_001367469:217 NM_001367470:217 NM_001267783:217 NM_001267782:217 NM_001367471:217 ENST00000534300.5:219 AB051523:219 AK000301:221 AK057896:227 LF348016:238 MA583593:238 ENST00000531542.1:242 ENST00000533727.5:292 AL834190:292 |
TATA-Box annotation
| Distance to TSS: | -218 |
|---|---|
| Nearest PromoterID: | NM_001367471 |
| Entrez ID: | 55626 |
| Nearest Unigene: | Hs.654644 |
| Nearest Refseq: | NM_017749 |
| Nearest Ensembl: | ENSG00000110497 |
| Gene Name: | autophagy and beclin 1 regulator 1 |
| Gene Alias: | DCAF3|WDR94 |
| Gene Description: | autophagy and beclin 1 regulator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
