Difference between revisions of "TSS:Hg 121135.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000542977.5 | + | |all_trans=ENST00000542977.5:39 ENST00000536119.5:90 AK309041:90 AK290509:97 ENST00000544238.5:-339 ENST00000535947.5:466 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_104178 | |nearest_refseq=NR_104178 | ||
|nearest_unigene=Hs.713607 | |nearest_unigene=Hs.713607 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=72041175 | |start=72041175 | ||
|start_of_center_position=72041180 | |start_of_center_position=72041180 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=11(TGCCTTTAAAGA,-,0.00),12(GCCTTTAAAGAA,+,0.00),12(GCCTTTAAAGAA,-,0.00) |
| − | |transcript_name=ENST00000542977.5 | + | |transcript_name=ENST00000542977.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121135.1 | |tss_id=hg_121135.1 | ||
Revision as of 00:18, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72041180 |
|---|---|
| End of the center position in the TSS region: | 72041181 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542977.5 |
|---|---|
| Distance: | 39 |
| Num_trans: | 6 |
| All_trans: | ENST00000542977.5:39 ENST00000536119.5:90 AK309041:90 AK290509:97 ENST00000544238.5:-339 ENST00000535947.5:466 |
TATA-Box annotation
| Distance to TSS: | 26890 |
|---|---|
| Nearest PromoterID: | NR_104178 |
| Entrez ID: | 100128494 |
| Nearest Unigene: | Hs.713607 |
| Nearest Refseq: | NR_104178 |
| Nearest Ensembl: | ENSG00000251143 |
| Gene Name: | nuclear mitotic apparatus protein 1 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128494 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 11(TGCCTTTAAAGA,-,0.00),12(GCCTTTAAAGAA,+,0.00),12(GCCTTTAAAGAA,-,0.00) |
