Difference between revisions of "TSS:Hg 121181.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PDE2A1= | |PDE2A1= | ||
|PED2A4= | |PED2A4= | ||
| − | |all_trans=ENST00000418754.6:0 ENST00000535701.1:0 | + | |all_trans=ENST00000334456.10:0 ENST00000418754.6:0 ENST00000535701.1:0 NM_002599:0 BC040974:0 AK295676:0 AK312434:0 AY495088:0 ENST00000542969.2:-5 ENST00000546038.1:-22 U67733:26 ENST00000540380.5:-163 AB384917:187 |
|cGSPDE= | |cGSPDE= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=11 |
|end=72674428 | |end=72674428 | ||
|end_of_center_position=72674411 | |end_of_center_position=72674411 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=CGS-PDE | + | |gene_alias=CGS-PDE{{!}}PDE2A1{{!}}PED2A4{{!}}cGSPDE |
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
|gene_id=5138 | |gene_id=5138 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=72674393 | |start=72674393 | ||
|start_of_center_position=72674410 | |start_of_center_position=72674410 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000418754.6 ENST00000535701.1 | + | |transcript_name=ENST00000334456.10 ENST00000418754.6 ENST00000535701.1 NM_002599 BC040974 AK295676 AK312434 AY495088 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121181.1 | |tss_id=hg_121181.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DIM1 E9PEF1 F5H2V7 Q8IW54 | + | |uniprot_id=B4DIM1 E9PEF1 F5H2V7 O00408 Q8IW54 |
}} | }} | ||
Revision as of 00:19, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72674410 |
|---|---|
| End of the center position in the TSS region: | 72674411 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000334456.10 ENST00000418754.6 ENST00000535701.1 NM_002599 BC040974 AK295676 AK312434 AY495088 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000334456.10:0 ENST00000418754.6:0 ENST00000535701.1:0 NM_002599:0 BC040974:0 AK295676:0 AK312434:0 AY495088:0 ENST00000542969.2:-5 ENST00000546038.1:-22 U67733:26 ENST00000540380.5:-163 AB384917:187 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_002599 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE|PDE2A1|PED2A4|cGSPDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
