Difference between revisions of "TSS:Hg 121182.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PDE2A1= | |PDE2A1= | ||
|PED2A4= | |PED2A4= | ||
| − | |all_trans=ENST00000546038.1:-2 | + | |all_trans=ENST00000546038.1:-2 ENST00000542969.2:7 ENST00000334456.10:18 ENST00000535701.1:18 NM_002599:18 BC040974:21 AY495088:23 AK312434:24 ENST00000418754.6:32 AK295676:32 U67733:72 ENST00000540380.5:-143 AB384917:233 |
|cGSPDE= | |cGSPDE= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-2 | |distance=-2 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-22 |
|end=72674448 | |end=72674448 | ||
|end_of_center_position=72674444 | |end_of_center_position=72674444 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=CGS-PDE | + | |gene_alias=CGS-PDE{{!}}PDE2A1{{!}}PED2A4{{!}}cGSPDE |
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
|gene_id=5138 | |gene_id=5138 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=72674439 | |start=72674439 | ||
|start_of_center_position=72674443 | |start_of_center_position=72674443 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000546038 | + | |transcript_name=ENST00000546038.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_121182.1 | |tss_id=hg_121182.1 | ||
Revision as of 00:19, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72674443 |
|---|---|
| End of the center position in the TSS region: | 72674444 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000546038.1 |
|---|---|
| Distance: | -2 |
| Num_trans: | 13 |
| All_trans: | ENST00000546038.1:-2 ENST00000542969.2:7 ENST00000334456.10:18 ENST00000535701.1:18 NM_002599:18 BC040974:21 AY495088:23 AK312434:24 ENST00000418754.6:32 AK295676:32 U67733:72 ENST00000540380.5:-143 AB384917:233 |
TATA-Box annotation
| Distance to TSS: | -22 |
|---|---|
| Nearest PromoterID: | NM_002599 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE|PDE2A1|PED2A4|cGSPDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
